Alternatives and similar repositories for assembly_stats

Users that are interested in assembly_stats are comparing it to the libraries listed below

• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 4 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆48Updated 3 months ago
• MaoYafei / GenoDup-Pipeline
  This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.
  ☆25Updated 6 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆68Updated 4 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆56Updated last month
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆110Updated 11 months ago
• chensole / bioinformatics
  ☆14Updated 5 years ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆96Updated 3 months ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆48Updated last month
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆83Updated 4 years ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆54Updated 6 months ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Updated last year
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• liangclab / HERA
  ☆77Updated 5 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 8 months ago
• YangJianshun / LINKVIEW
  DNA序列比对结果 可视化展示工具
  ☆45Updated 3 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆39Updated 7 years ago
• philippbayer / orthomclToVenn
  Creates Venn diagrams for OrthoMCL output
  ☆17Updated 8 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated 11 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆49Updated last year
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆32Updated last year
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆97Updated last year
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago