A python tool to evaluate genomic prediction in complex scenarios
☆37Oct 18, 2022Updated 3 years ago
Alternatives and similar repositories for SeqBreed
Users that are interested in SeqBreed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- Plant breeding simulations with AlphaSimR☆28Jan 5, 2025Updated last year
- Repository for code used for publications☆30Updated this week
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated 2 months ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆13Apr 2, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Nov 23, 2020Updated 5 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Sep 26, 2025Updated 7 months ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆18Sep 27, 2017Updated 8 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 6 months ago
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆15Apr 5, 2019Updated 7 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quick, straight to the point tour on how to implement genomic prediction (GP) in R☆13May 21, 2022Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated 2 weeks ago
- lme4 for Genomic Selection☆18Jan 26, 2026Updated 3 months ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated last year
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 6 months ago
- Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning☆71Jul 6, 2023Updated 2 years ago
- ☆11Mar 4, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Feb 16, 2025Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆211Jul 5, 2025Updated 9 months ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆47Apr 8, 2025Updated last year
- DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.☆12May 4, 2022Updated 3 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- A python3 package for operations on pedigree and genotype data☆21Nov 13, 2017Updated 8 years ago
- ☆29Nov 22, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆20Updated this week
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 9 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- ☆13Jun 27, 2024Updated last year
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- DeepWAS: Directly integrating regulatory information into GWAS using machine learning☆17Mar 14, 2019Updated 7 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 11 months ago