distance based phylogenetic placement
☆28Feb 28, 2024Updated 2 years ago
Alternatives and similar repositories for apples
Users that are interested in apples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Mar 19, 2025Updated last year
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 3 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Sep 28, 2023Updated 2 years ago
- ☆13May 15, 2026Updated 3 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆43Apr 2, 2024Updated 2 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆12Jul 11, 2026Updated last month
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆10Mar 24, 2025Updated last year
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 5 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated last month
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Jun 1, 2026Updated 2 months ago
- ☆11Apr 25, 2024Updated 2 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 4, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 3 years ago
- ☆16Apr 11, 2026Updated 4 months ago
- FAVITES (FrAmework for VIral Transmission and Evolution Simulation)☆40Nov 11, 2023Updated 2 years ago
- Graph Clustering Merger☆36Mar 25, 2024Updated 2 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 8 months ago
- SKSE plugin for BFCO - Attack Behavior Framework in Nexusmods: https://www.nexusmods.com/skyrimspecialedition/mods/117052☆14Jun 9, 2024Updated 2 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆43Apr 30, 2026Updated 3 months ago
- ☆15Aug 6, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated 10 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆26Jul 18, 2026Updated 3 weeks ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 3 years ago
- ☆17Jan 6, 2023Updated 3 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated last year
- ☆14Apr 4, 2023Updated 3 years ago
- PTa Analysis TOolkit☆19Jun 9, 2026Updated 2 months ago
- ☆83May 2, 2026Updated 3 months ago
- Lightweight python library for predicting the difficulty of alignments in phylogenetics☆26Dec 6, 2025Updated 8 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆22Sep 4, 2024Updated last year
- ☆10May 3, 2021Updated 5 years ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Jan 19, 2018Updated 8 years ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated last year
- A multi-algorithmic framework for phylogenetic inference☆14Aug 10, 2026Updated last week
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆49Apr 14, 2020Updated 6 years ago
- Using Mamba-forge for Python environment management☆23Oct 1, 2024Updated last year