R script for generating functionally informed genetic risk scores from TWAS
☆11Jul 20, 2023Updated 2 years ago
Alternatives and similar repositories for Inferred-functional-risk-scoring
Users that are interested in Inferred-functional-risk-scoring are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 9 months ago
- This is a pipeline for calculating weights for TWAS☆33Aug 3, 2022Updated 3 years ago
- R script that performs gene-set or gene property analysis using TWAS results.☆33Sep 11, 2024Updated last year
- R script to make Manhattan-style plot for TWAS☆41Aug 15, 2021Updated 4 years ago
- Transcriptome-wide association study of Major Depressive Disorder☆12Sep 17, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Genotype-based Prediction (GenoPred)☆77Updated this week
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- ☆15Apr 20, 2021Updated 4 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 3 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Nov 15, 2024Updated last year
- GENetic Effect-Size distribution Inference from Summary-level data☆15Sep 6, 2020Updated 5 years ago
- ☆21Sep 12, 2025Updated 6 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆27Dec 10, 2025Updated 3 months ago
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 9 months ago
- MR-link-2: pleiotropy robust cis MR☆21Aug 4, 2025Updated 7 months ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Nov 26, 2023Updated 2 years ago
- ☆14Jun 24, 2024Updated last year
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- Python script for multivariate GWAS meta-analysis☆24Dec 6, 2024Updated last year
- ☆11Mar 16, 2022Updated 4 years ago
- Leveraging functional information to improve GWAS summary statistic imputation☆20Aug 10, 2021Updated 4 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 5 months ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 6 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- ☆15Dec 8, 2023Updated 2 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Mar 17, 2026Updated last week