Alternatives and similar repositories for Inferred-functional-risk-scoring:

Users that are interested in Inferred-functional-risk-scoring are comparing it to the libraries listed below

• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆15Updated last month
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated last year
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆30Updated 2 years ago
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆31Updated 4 months ago
• mglev1n / mrSampleOverlap
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Updated 2 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆14Updated 2 months ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 10 months ago
• opain / MDD-TWAS
  Transcriptome-wide association study of Major Depressive Disorder
  ☆12Updated 4 years ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆18Updated 8 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆37Updated 3 years ago
• adriaan-vd-graaf / mrlink2
  MR-link 2 is a summary statistics _cis_ MR method that is pleiotropy robust.
  ☆13Updated last month
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆26Updated 3 months ago
• cumc / pecotmr
  Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆20Updated this week
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 9 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• hakyimlab / brainxcan
  ☆8Updated last year
• cuelee / pleio
  ☆18Updated 10 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆21Updated 6 years ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 5 months ago
• LizaDarrous / PheWAS-cluster
  ☆19Updated 4 months ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆14Updated 6 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆14Updated 3 years ago
• jinghuazhao / pQTLtools
  pQTL tools
  ☆18Updated this week
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆31Updated 2 years ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆13Updated 3 months ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• genomicsITER / PFgenetics
  Collaborative genetic studies of idiopathic pulmonary fibrosis
  ☆16Updated 3 weeks ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 4 months ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆13Updated last month