xtonyjiang / GNOVALinks
A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
☆30Updated last year
Alternatives and similar repositories for GNOVA
Users that are interested in GNOVA are comparing it to the libraries listed below
Sorting:
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- Software for estimating correlation of trait effect sizes across populations☆49Updated 3 months ago
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- Regional association plots☆25Updated last year
- ☆36Updated 4 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 3 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆29Updated 2 weeks ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated last year
- ☆35Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated 2 years ago
- ☆19Updated last month
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆55Updated 4 years ago
- Genetics ToolboX R package☆32Updated 5 years ago
- GENI plots to visualise results from genome-wide association studies☆30Updated 11 months ago
- An R package for creating ggplot2 based miami plots.☆17Updated 6 months ago
- R script to make Manhattan-style plot for TWAS☆40Updated 4 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- Leveraging functional information to improve GWAS summary statistic imputation☆19Updated 4 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆43Updated 6 months ago
- GWAS for survival analysis in large cohorts☆22Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆37Updated 11 months ago
- A collection of various utilities for GWAS summary statistics☆32Updated last year
- Genotype-based Prediction (GenoPred)☆73Updated last week
- S-LDSC scripts for use on MR server.☆10Updated 3 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆54Updated last year
- corrplot of LDSC genetic correlation results☆55Updated 3 years ago
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- Pariwise analysis of GWAS☆44Updated 6 years ago