xtonyjiang / GNOVALinks
A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
☆31Updated last year
Alternatives and similar repositories for GNOVA
Users that are interested in GNOVA are comparing it to the libraries listed below
Sorting:
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- Regional association plots☆25Updated last year
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆30Updated last week
- ☆37Updated 4 years ago
- Software for estimating correlation of trait effect sizes across populations☆49Updated 4 months ago
- Hypothesis Prioritisation in multi-trait Colocalization☆54Updated last year
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆36Updated 3 weeks ago
- R script to make Manhattan-style plot for TWAS☆40Updated 4 years ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆56Updated 4 years ago
- GWAS for survival analysis in large cohorts☆22Updated last year
- ☆19Updated 2 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆34Updated 3 months ago
- A collection of various utilities for GWAS summary statistics☆32Updated last year
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 8 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 3 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated 2 years ago
- Leveraging functional information to improve GWAS summary statistic imputation☆19Updated 4 years ago
- ☆35Updated 2 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated 2 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆26Updated 4 years ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 6 months ago
- Fine-mapping method only using summary statistics☆20Updated 9 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated last year
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆15Updated 5 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- GENI plots to visualise results from genome-wide association studies☆30Updated 11 months ago