daiqile96 / OTTERS
A powerful TWAS framework leveraging summary-level reference data
☆26Updated 2 weeks ago
Alternatives and similar repositories for OTTERS:
Users that are interested in OTTERS are comparing it to the libraries listed below
- ☆34Updated 4 years ago
- ☆21Updated 2 months ago
- Regional association plots☆25Updated 9 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 9 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆33Updated 4 months ago
- Assessing enrichment of complex disease or trait associations among QTLs☆14Updated 4 years ago
- ☆18Updated 11 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆30Updated 5 months ago
- An R package for creating ggplot2 based miami plots.☆16Updated 10 months ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆16Updated last month
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆13Updated 2 months ago
- Colocalization analysis of genetic association signals☆50Updated 2 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 6 years ago
- This is a pipeline for calculating weights for TWAS☆30Updated 2 years ago
- Integration of TWAS and Colocalization Analysis☆14Updated 3 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆26Updated 9 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- GWAS genetics Fine-mapping method☆21Updated 3 months ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- ☆23Updated 5 years ago
- Quality control steps for GWAS☆19Updated last year
- A collection of various utilities for GWAS summary statistics☆26Updated 8 months ago
- Code for implementing Mendelian randomization investigations☆15Updated 9 years ago
- Estimate genetic correlation using predicted expression☆21Updated 6 years ago
- ☆32Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆20Updated this week
- ☆12Updated 3 weeks ago
- Regional association plots☆25Updated 9 months ago