daiqile96 / OTTERSLinks
A powerful TWAS framework leveraging summary-level reference data
☆31Updated 6 months ago
Alternatives and similar repositories for OTTERS
Users that are interested in OTTERS are comparing it to the libraries listed below
Sorting:
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 8 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated 2 years ago
- ☆19Updated 2 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆36Updated last month
- Regional association plots☆25Updated last year
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 3 months ago
- ☆57Updated 9 months ago
- ☆20Updated last month
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- S-LDSC scripts for use on MR server.☆10Updated 4 years ago
- ☆32Updated 3 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated last year
- ☆37Updated 4 years ago
- ☆30Updated 4 years ago
- Tissue-Gene Fine-Mapping☆25Updated 7 months ago
- R script to make Manhattan-style plot for TWAS☆41Updated 4 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Updated last year
- FLAMES: Accurate gene prioritization in GWAS loci☆50Updated 7 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆30Updated this week
- Software for estimating correlation of trait effect sizes across populations☆50Updated 5 months ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆34Updated 3 months ago
- Hypothesis Prioritisation in multi-trait Colocalization☆55Updated last year
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆41Updated last week
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated last year
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆20Updated last month
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆56Updated 4 years ago
- MR-link-2: pleiotropy robust cis MR☆20Updated 2 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆20Updated 2 weeks ago
- Integration of TWAS and Colocalization Analysis☆17Updated last year