bsml320 / deTS
deTS
☆18Updated 5 years ago
Alternatives and similar repositories for deTS:
Users that are interested in deTS are comparing it to the libraries listed below
- identifying disease critical cell types and programs from single cell RNAseq☆54Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆51Updated 2 years ago
- ☆46Updated 5 months ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆32Updated last month
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- ☆35Updated 4 years ago
- ☆15Updated last month
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆23Updated this week
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 6 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆15Updated last week
- Colocalization analysis of genetic association signals☆51Updated 5 months ago
- ☆78Updated 2 years ago
- ☆19Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆29Updated 3 weeks ago
- ☆15Updated 2 years ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆48Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- ☆18Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 5 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated last year
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 2 years ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Updated this week
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆45Updated 3 months ago
- GWAS genetics Fine-mapping method☆23Updated 6 months ago