precimed / gsa-mixerLinks
☆16Updated this week
Alternatives and similar repositories for gsa-mixer
Users that are interested in gsa-mixer are comparing it to the libraries listed below
Sorting:
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆19Updated 2 months ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 2 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated last month
- Integration of TWAS and Colocalization Analysis☆17Updated 10 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 6 months ago
- MR-link-2: pleiotropy robust cis MR☆20Updated 3 weeks ago
- ☆29Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆34Updated 2 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated 11 months ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated 2 years ago
- ☆19Updated 3 weeks ago
- R script to make Manhattan-style plot for TWAS☆39Updated 4 years ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 4 months ago
- Fine-mapping method only using summary statistics☆20Updated 9 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆32Updated 2 months ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Updated 2 months ago
- cfdr.pleio is an R package implementing conditional and conjunctional false discovery rates for studying pleiotropic gene variants betwee…☆17Updated 2 years ago
- Create Regional Association Plots☆12Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆17Updated 6 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 3 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆32Updated last month
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆28Updated last week
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆18Updated 4 years ago
- ☆12Updated this week
- Software to infer latent pleiotropic components from GWAS summary data☆15Updated 7 months ago