Alternatives and similar repositories for SPOT-1D-Single:

Users that are interested in SPOT-1D-Single are comparing it to the libraries listed below

• jas-preet / SPOT-Contact-LM
  The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.
  ☆15Updated last year
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated 11 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆23Updated last year
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆38Updated 3 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆32Updated last year
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆29Updated last year
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆22Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 7 months ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆31Updated last month
• TobiasHeOl / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆15Updated 9 months ago
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML
  ☆20Updated 2 years ago
• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆22Updated 2 years ago
• aaronkollasch / seqdesign-pytorch
  Protein design and variant prediction using autoregressive generative models
  ☆23Updated 2 years ago
• Furman-Lab / PatchMAN
  ☆25Updated 7 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆45Updated 2 months ago
• AbSciBio / igdesign
  ☆31Updated last month
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆40Updated 3 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆28Updated 11 months ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆26Updated 4 years ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆21Updated last year
• Doudna-lab / GARNET_DL
  ☆33Updated last month
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆35Updated last year
• Liuxg16 / GeoPPI
  ☆80Updated 2 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 2 years ago
• liedllab / TopModel
  A structure checker in python
  ☆19Updated 3 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆34Updated 5 months ago
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 4 months ago