Alternatives and similar repositories for SPOT-1D-Single

Users that are interested in SPOT-1D-Single are comparing it to the libraries listed below

• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆25Updated last year
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆34Updated 4 years ago
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 5 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• lhatsk / AlphaLink
  AlphaLink: Integrating crosslinking MS data into OpenFold
  ☆68Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• ElwynWang / DeepFragLib
  ☆29Updated 5 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆51Updated 3 weeks ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆20Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 7 months ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆40Updated last year
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆60Updated 2 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 7 months ago
• ChengfeiYan / PLMGraph-Inter
  A program fror inter-protein contact prediction from structures of interacting proteins
  ☆19Updated last year
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆69Updated 2 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆36Updated 4 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆43Updated 2 years ago
• piercelab / tcrmodel2
  ☆41Updated 5 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated 4 months ago
• TobiasHeOl / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆20Updated 5 months ago
• cmbi / dssp
  The DSSP building software
  ☆47Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆54Updated 7 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆41Updated 3 months ago