Alternatives and similar repositories for atomsurf

Users that are interested in atomsurf are comparing it to the libraries listed below

• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆32Updated last year
• LirongWu / Uni-Anti
  ☆15Updated 5 months ago
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated 2 years ago
• HannesStark / CodonMPNN
  ☆27Updated 6 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 7 months ago
• Marco-Peg / GEP
  ☆14Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆32Updated 3 weeks ago
• PKUfjh / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆11Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆33Updated 3 months ago
• thejonaslab / vonmises-icml-2023
  ☆10Updated 2 years ago
• JocelynSong / NAEPro
  ☆12Updated last year
• Croydon-Brixton / proteinmpnn_wrapper
  A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
  ☆11Updated last year
• HySonLab / Ligand_Generation
  Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning
  ☆30Updated last year
• Minys233 / Dynaformer
  ☆31Updated 11 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆32Updated last year
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 4 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated 2 weeks ago
• bjing2016 / scalar-fields
  Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms
  ☆29Updated last year
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆25Updated last month
• flagshippioneering / flash_ipa
  Efficient implementation of the IPA module.
  ☆28Updated 3 weeks ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆18Updated 2 months ago
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆31Updated last week
• ai4protein / VenusX
  ☆13Updated last month
• Profluent-Internships / ProCALM
  A conditionally adapted protein language model for the generation of enzymes
  ☆21Updated 7 months ago
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆16Updated last month
• ZhiGroup / FDA
  Folding-Docking-Affinity framework for protein-ligand affinity prediction
  ☆26Updated 3 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆32Updated 6 months ago
• mgreenig / loopgen
  SE(3) diffusion models for generating CDR loops
  ☆10Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆43Updated 7 months ago
• smiles724 / PeptideDesign
  ☆27Updated last week