Alternatives and similar repositories for ProDESIGN-LE

Users that are interested in ProDESIGN-LE are comparing it to the libraries listed below

• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆42Updated 5 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 8 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆25Updated 5 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆70Updated this week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆66Updated 3 months ago
• liuyf020419 / SCUBA-D
  ☆62Updated last year
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• Furman-Lab / PatchMAN
  ☆27Updated 2 weeks ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆37Updated 4 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 3 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆31Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 2 weeks ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• bene837 / af2seq
  ☆44Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated last month
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆36Updated 3 weeks ago
• Wublab / pythia_ppi
  PPI version of Pythia
  ☆21Updated last month
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆21Updated 7 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆58Updated 2 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆45Updated this week
• tianlt / deepdirect
  ☆17Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 7 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆56Updated 5 months ago
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆24Updated 11 months ago