An accurate and efficient protein sequence design approach
☆27Mar 16, 2025Updated last year
Alternatives and similar repositories for ProDESIGN-LE
Users that are interested in ProDESIGN-LE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Oct 4, 2022Updated 3 years ago
- Rosetta Funclib☆25May 9, 2020Updated 6 years ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 6 months ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- ☆37Feb 4, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 4 years ago
- ☆27Dec 6, 2022Updated 3 years ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- A geometric deep learning method for refining and assessing protein complex structures.☆16Oct 22, 2022Updated 3 years ago
- ☆52Jun 19, 2024Updated 2 years ago
- Scripts and data to run AbDesign as described in Tools for protein science 2021☆13Nov 4, 2020Updated 5 years ago
- Universal framework for physically based computational protein design☆36Sep 9, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆117Apr 15, 2026Updated 5 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆86Oct 24, 2025Updated 10 months ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆16Jan 23, 2026Updated 7 months ago
- ☆30Apr 2, 2026Updated 5 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Jan 3, 2024Updated 2 years ago
- Design scripts corresponding to "Computational design of sequence-specific DNA-binding proteins."☆22Oct 23, 2025Updated 10 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆51Mar 21, 2024Updated 2 years ago
- ☆21Oct 31, 2024Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆84Jul 2, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Gibbs sampling for generating protein sequences☆57Jan 17, 2025Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆97Jul 31, 2026Updated last month
- DeepSoluE☆18Sep 18, 2023Updated 3 years ago
- ☆12Feb 17, 2023Updated 3 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 6 months ago
- DyRAMO: Dynamic Reliability Adjustment for Multi-objective Optimization☆17Mar 17, 2025Updated last year
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- A compilation of deep learning methods for protein design☆95Nov 5, 2022Updated 3 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆124Aug 14, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MSU ProFlex (formerly called FIRST) predicts the rigid and flexible regions in a protein structure, given a Protein Data Bank (PDB) file …☆10Apr 16, 2022Updated 4 years ago
- ☆64Sep 14, 2023Updated 3 years ago
- example demonstrating a free energy estimation starting from OFF and OpenMM☆12Oct 21, 2020Updated 5 years ago
- AI Agent Skills for MD analysis☆20Aug 25, 2026Updated 3 weeks ago
- De novo design of small molecule binding sites into proteins☆11Apr 14, 2021Updated 5 years ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆96Dec 29, 2023Updated 2 years ago
- Code for holographic machine learning of proteins☆25Oct 29, 2024Updated last year