Reference-free analysis of genetic architecture
☆23Sep 21, 2024Updated 2 years ago
Alternatives and similar repositories for RFA
Users that are interested in RFA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Consolidated repository to perform RLXF☆49Sep 14, 2026Updated last week
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆46Aug 5, 2025Updated last year
- Gibbs sampling for generating protein sequences☆57Jan 17, 2025Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆57Aug 13, 2026Updated last month
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆25Mar 6, 2025Updated last year
- ☆187Jul 24, 2026Updated last month
- ☆31Dec 12, 2024Updated last year
- ☆43Jun 12, 2025Updated last year
- Code and model weights for PoET-2, a retrieval-augmented multimodel protein language model for protein sequence generation and representa…☆30Aug 20, 2025Updated last year
- Aligning protein generative models with experimental fitness☆152Mar 12, 2026Updated 6 months ago
- A collection of tutorials for the python implementation of Dynamical Network Analysis☆15Aug 6, 2025Updated last year
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 5 months ago
- ☆58May 26, 2026Updated 3 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python implementation of Dynamical Network Analysis☆16Aug 6, 2025Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆145Apr 25, 2026Updated 4 months ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated last month
- the MAVISp database for annotations and predictions of variant effects at the protein level☆13Sep 1, 2026Updated 3 weeks ago
- ☆21Nov 21, 2025Updated 10 months ago
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 6 months ago
- Adapting protein language models for structure-conditioned design☆43Aug 5, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Enzyme kinetics data extraction pipeline☆17Sep 7, 2026Updated 2 weeks ago
- Cross-protein transfer learning for variant effect prediction☆21Sep 13, 2023Updated 3 years ago
- ☆84Jun 29, 2025Updated last year
- Steering discrete diffusion models with labeled data for protein fitness optimization☆31Nov 1, 2025Updated 10 months ago
- Data Files for "Deep diversification of an AAV capsid protein by machine learning"☆18Mar 9, 2021Updated 5 years ago
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆62Nov 5, 2025Updated 10 months ago
- ☆25Jun 10, 2026Updated 3 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆42Mar 30, 2025Updated last year
- ☆219Sep 24, 2024Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- Repository for mRNA Paper and CodonBERT publication.☆147May 19, 2026Updated 4 months ago
- Integrative protein sequence design with evolutionary multiobjective optimization.☆13Jul 16, 2024Updated 2 years ago
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 6 years ago
- Easy to use and efficient implementations of Protein Language Models☆51Sep 15, 2026Updated last week