Reference-free analysis of genetic architecture
☆22Sep 21, 2024Updated last year
Alternatives and similar repositories for RFA
Users that are interested in RFA are comparing it to the libraries listed below
Sorting:
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Aug 5, 2025Updated 7 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆55Apr 10, 2025Updated 10 months ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- Consolidated repository to perform RLXF☆40Feb 5, 2026Updated last month
- the MAVISp database for annotations and predictions of variant effects at the protein level☆13Feb 19, 2026Updated 2 weeks ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 4 months ago
- ☆31Dec 12, 2024Updated last year
- Data Files for "Deep diversification of an AAV capsid protein by machine learning"☆18Mar 9, 2021Updated 4 years ago
- PLMFit platform for TL on PLMs☆20Aug 13, 2025Updated 6 months ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆23Feb 26, 2026Updated last week
- ☆36Mar 30, 2025Updated 11 months ago
- ☆70Feb 25, 2026Updated last week
- A collection of tutorials for the python implementation of Dynamical Network Analysis☆15Aug 6, 2025Updated 6 months ago
- Python implementation of Dynamical Network Analysis☆16Aug 6, 2025Updated 6 months ago
- ☆39Jun 12, 2025Updated 8 months ago
- Cross-protein transfer learning for variant effect prediction☆20Sep 13, 2023Updated 2 years ago
- ☆19Nov 21, 2025Updated 3 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Aligning protein generative models with experimental fitness☆119Oct 16, 2025Updated 4 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- ☆77Aug 26, 2025Updated 6 months ago
- ☆82Jun 29, 2025Updated 8 months ago
- Structure prediction of alternative protein conformations☆82Feb 24, 2025Updated last year
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- ☆20May 24, 2025Updated 9 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82May 16, 2025Updated 9 months ago
- ☆86Sep 20, 2023Updated 2 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Dec 3, 2024Updated last year
- Code for LazyAF pipeline☆23Feb 12, 2024Updated 2 years ago
- ☆23Jun 10, 2025Updated 8 months ago
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆56Nov 5, 2025Updated 4 months ago
- ☆212Sep 24, 2024Updated last year
- Code for the paper "Learning to engineer protein flexibility".☆22Jan 21, 2026Updated last month
- KinDEL is a large DNA-encoded library dataset containing two kinase targets (DDR1 and MAPK14) for benchmarking machine learning models.☆28Sep 2, 2025Updated 6 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- ☆23Jul 14, 2023Updated 2 years ago
- ☆22Nov 6, 2024Updated last year