whatdoidohaha / RFALinks
Reference-free analysis of genetic architecture
☆17Updated 9 months ago
Alternatives and similar repositories for RFA
Users that are interested in RFA are comparing it to the libraries listed below
Sorting:
- An antibody-specific language model focusing on NGL prediction☆29Updated 10 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆47Updated 3 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆46Updated 2 months ago
- ☆35Updated 6 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Protein language model trained on coding DNA☆47Updated 8 months ago
- Biological prediction models made simple.☆44Updated last week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆78Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆114Updated 4 months ago
- Ultra-fast in-silico structure mutation☆34Updated 3 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆29Updated 10 months ago
- RNA Multiple Sequence Alignment☆43Updated last year
- ☆68Updated 9 months ago
- ☆44Updated 10 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 3 weeks ago
- Efficient implementatin of ESM family.☆58Updated 5 months ago
- ☆26Updated 2 weeks ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 3 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- ☆41Updated 6 months ago
- PLM based active learning model for protein engineering☆82Updated 11 months ago
- Template-based protein design with Raygun☆70Updated last month
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 3 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆52Updated 6 months ago
- Gibbs sampling for generating protein sequences☆56Updated 6 months ago
- ☆31Updated 4 years ago
- Protein Design by Machine Learning guided Directed Evolution☆43Updated 3 months ago
- ☆58Updated 8 months ago
- Metrics for our protein design competitions.☆33Updated 8 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago