Alternatives and similar repositories for apm

Users that are interested in apm are comparing it to the libraries listed below

• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆65Updated 3 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆84Updated last year
• 3BioCompBio / AbAgym
  ☆16Updated 2 weeks ago
• Profluent-AI / E1
  Profluent-E1 family of Protein Encoder Models
  ☆93Updated 3 weeks ago
• alexechu / protpardelle
  ☆65Updated 2 years ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated last month
• wengong-jin / DSMBind
  ☆96Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆114Updated last month
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆70Updated 4 months ago
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆71Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 4 months ago
• luwei0917 / BindingGYM
  ☆34Updated 4 months ago
• KatarinaYuan / StructTokenBench
  A benchmark for comprehensive evaluation on protein structure tokenization methods
  ☆37Updated 4 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆46Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆40Updated 4 months ago
• LeiLiLab / EnzyGen
  ☆39Updated 6 months ago
• levinthal / Pallatom
  ☆128Updated 6 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• zhanghaicang / carbonmatrix_public
  ☆118Updated 6 months ago
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆37Updated 2 years ago
• JoreyYan / Originflow
  ☆19Updated 3 weeks ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆80Updated last year
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆46Updated 2 years ago
• Gonglab-THU / GeoStab
  ☆39Updated last year
• baker-laboratory / CA_RFDiffusion
  ☆74Updated 6 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• luo-group / SPURS
  Protein stability prediction using rewired protein generative models
  ☆36Updated this week
• idlutz / protein-backbone-MCTS
  ☆52Updated last year
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆27Updated 2 years ago