Alternatives and similar repositories for apm

Users that are interested in apm are comparing it to the libraries listed below

• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆61Updated 10 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆78Updated last year
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆77Updated last year
• KatarinaYuan / StructTokenBench
  A benchmark for comprehensive evaluation on protein structure tokenization methods
  ☆26Updated last month
• A4Bio / FoldToken_open
  ☆20Updated 8 months ago
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆10Updated 7 months ago
• alexechu / protpardelle
  ☆65Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆60Updated last month
• luwei0917 / BindingGYM
  ☆25Updated 11 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 8 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆44Updated 7 months ago
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆64Updated last year
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆63Updated 2 months ago
• HannesStark / CodonMPNN
  ☆27Updated 7 months ago
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆26Updated 2 years ago
• ai4protein / VenusMine
  ☆22Updated last month
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆110Updated 3 weeks ago
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• Junjie-Zhu / IDPFold
  IDPFold test version
  ☆21Updated 10 months ago
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆23Updated 10 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆43Updated 7 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆21Updated 4 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• Gonglab-THU / GeoStab
  ☆35Updated 8 months ago
• wengong-jin / DSMBind
  ☆91Updated 9 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆40Updated 7 months ago
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆46Updated last year
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆24Updated last year
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆59Updated 2 months ago