Alternatives and similar repositories for evo

Users that are interested in evo are comparing it to the libraries listed below

• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆71Updated 4 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆84Updated last year
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆108Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 8 months ago
• alex-hh / deep-protein-generation
  ☆59Updated 2 years ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆71Updated 4 months ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆111Updated this week
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆76Updated 2 months ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 4 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆111Updated last month
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆60Updated last month
• chandar-lab / AMPLIFY
  ☆116Updated 4 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆164Updated last year
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆151Updated 2 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆120Updated 4 years ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆84Updated last year
• AbSciBio / igdesign
  ☆47Updated 10 months ago
• aqlaboratory / rgn2
  ☆109Updated last year
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆33Updated last year
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆172Updated last year
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆80Updated 9 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆85Updated 3 months ago
• yoakiyama / MSA_Pairformer
  ☆112Updated 2 weeks ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆181Updated 3 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆81Updated 2 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆46Updated 2 years ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆57Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago