Alternatives and similar repositories for evo:

Users that are interested in evo are comparing it to the libraries listed below

• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆28Updated 7 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆70Updated 11 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆58Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆88Updated 5 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• alex-hh / deep-protein-generation
  ☆56Updated 2 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆61Updated 3 years ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 2 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆107Updated 2 weeks ago
• Doudna-lab / GARNET_DL
  ☆36Updated 2 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆97Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆46Updated 5 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆83Updated 7 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆54Updated 2 months ago
• AbSciBio / igdesign
  ☆34Updated 2 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆28Updated this week
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆107Updated 8 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆50Updated 8 months ago
• brineylab / antiref
  AntiRef: reference clusters of human antibody sequences
  ☆12Updated 11 months ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆74Updated 7 months ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆28Updated 2 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆97Updated 6 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆49Updated 3 months ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆108Updated 3 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆44Updated 4 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 4 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆64Updated last week
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆148Updated last year