rmrao / evo

Related projects ⓘ

Alternatives and complementary repositories for evo

• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• fhalab / SPGen
  ☆18Updated 3 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆47Updated 6 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆22Updated 8 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆56Updated 3 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆54Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆62Updated 4 months ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆25Updated 3 months ago
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆26Updated 4 years ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆51Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆82Updated 2 weeks ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆42Updated 3 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆27Updated last year
• piercelab / tcrmodel2
  ☆33Updated last month
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆47Updated last week
• alex-hh / deep-protein-generation
  ☆55Updated 2 years ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆101Updated 4 months ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆20Updated 2 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆71Updated last month
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆34Updated 3 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆40Updated 3 years ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆32Updated last year
• sarisabban / RamaNet
  Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
  ☆49Updated 2 years ago
• TobiasHeOl / AbLang
  AbLang: A language model for antibodies
  ☆16Updated last year
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆68Updated 3 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆25Updated this week
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆24Updated last year
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆25Updated 10 months ago