☆27May 22, 2025Updated last year
Alternatives and similar repositories for fundamentals-of-bioinformatics
Users that are interested in fundamentals-of-bioinformatics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sketch-based surveillance platform☆14Jul 2, 2026Updated last week
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Jun 4, 2026Updated last month
- Plasmid analysis using rearrangement distances☆56Jul 1, 2026Updated last week
- Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequ…☆22Jun 5, 2026Updated last month
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆91Mar 10, 2026Updated 3 months ago
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- Rapid & standardized genome annotation using protein structural information☆69Jul 2, 2026Updated last week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Mar 25, 2026Updated 3 months ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 3 months ago
- ☆10Apr 16, 2025Updated last year
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆28Updated this week
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated 2 weeks ago
- ☆23Jun 27, 2026Updated last week
- ☆24Feb 2, 2026Updated 5 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 7 months ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 5 years ago
- ☆49Jul 2, 2026Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python package to update the MLST database for the mlst tool.☆27May 27, 2026Updated last month
- Reference-based consensus creation☆61Jul 1, 2026Updated last week
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 5 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 4 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated 3 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated last month
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Apr 22, 2026Updated 2 months ago
- Population analysis PIPEline 🛠🧬☆25Mar 2, 2026Updated 4 months ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 10 months ago
- ☆33Updated this week
- Graph-based assembly phasing☆98Nov 25, 2025Updated 7 months ago