☆27May 22, 2025Updated 9 months ago
Alternatives and similar repositories for fundamentals-of-bioinformatics
Users that are interested in fundamentals-of-bioinformatics are comparing it to the libraries listed below
Sorting:
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated last week
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Plasmid analysis using rearrangement distances☆50Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆42Feb 25, 2026Updated last week
- Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequ…☆21Updated this week
- ☆23Sep 9, 2025Updated 6 months ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆89Feb 5, 2026Updated last month
- A tool to detect acquired AMR genes directly from long read sequencing data.☆20Jan 31, 2026Updated last month
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Genome size estimation from long read overlaps☆81Mar 2, 2026Updated last week
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 8 months ago
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆17Dec 9, 2025Updated 3 months ago
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆23Dec 19, 2025Updated 2 months ago
- Population analysis PIPEline 🛠🧬☆22Mar 2, 2026Updated last week
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 10 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 3 weeks ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆18Nov 20, 2025Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 10 months ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- ☆22Feb 2, 2026Updated last month
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 3 months ago
- Interpretative standards for AMR genotypes☆27Mar 2, 2026Updated last week
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆42Updated this week
- Reorients assembled microbial sequences☆135Aug 21, 2025Updated 6 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆46Mar 2, 2026Updated last week
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 6 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 3 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆23Sep 12, 2024Updated last year
- ☆10Dec 16, 2024Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 10 months ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 4 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last week