Alternatives and similar repositories for ncbi-blast-dbs

Users that are interested in ncbi-blast-dbs are comparing it to the libraries listed below

• s4hts / HTStream
  A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
  ☆51Updated last year
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆27Updated 2 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆38Updated 8 years ago
• balabanmetin / uDance
  ☆43Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 3 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated 2 months ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• evolbioinfo / booster
  ☆28Updated 5 years ago
• hallamlab / metapathways2
  MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
  ☆33Updated 10 years ago
• ariloytynoja / prank-msa
  Automatically exported from code.google.com/p/prank-msa
  ☆31Updated 2 months ago
• lorrainea / MARS
  MARS: improving Multiple circular sequence Alignment using Refined Sequences
  ☆31Updated 8 months ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆74Updated last week
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 3 weeks ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆64Updated last week
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 4 months ago
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆27Updated 6 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• BFL-lab / Mfannot
  MFannot is a program for the annotation of mitochondrial and plastid genomes
  ☆22Updated 2 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 11 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 4 years ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 2 months ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆35Updated last year
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆71Updated last month
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆43Updated 2 weeks ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆31Updated 4 months ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆55Updated 7 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated 3 weeks ago
• jimhester / fasta_utilities
  A collection of scripts developed to interact with fasta, fastq and sam/bam files.
  ☆53Updated 9 years ago