s4hts / HTStream
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
☆49Updated 2 months ago
Alternatives and similar repositories for HTStream:
Users that are interested in HTStream are comparing it to the libraries listed below
- catalog for long-read sequencing tools☆32Updated 2 years ago
- processing 10x genomics reads☆25Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 5 months ago
- ☆29Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated last week
- Error correction of ONT transcript reads☆58Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated this week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Filter SAM file for soft and hard clipped alignments☆46Updated 10 months ago
- A local-haplotagging-based small and structural variant caller☆69Updated last week
- perSVade: personalized Structural Variation detection☆38Updated last month
- ☆47Updated 4 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 9 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆27Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- python plotly Circos from VCF☆34Updated 9 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Simple pileup-based variant caller☆87Updated last month
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year