s4hts / HTStreamLinks
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
☆50Updated 6 months ago
Alternatives and similar repositories for HTStream
Users that are interested in HTStream are comparing it to the libraries listed below
Sorting:
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Long-read splice alignment with high accuracy☆64Updated 10 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- processing 10x genomics reads☆26Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- ☆49Updated 9 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Filter SAM file for soft and hard clipped alignments☆51Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆35Updated last week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Master of Pores 2☆23Updated 8 months ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated this week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 8 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆44Updated 2 weeks ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month