Alternatives and similar repositories for proc10xG

Users that are interested in proc10xG are comparing it to the libraries listed below

• s4hts / HTStream

  View on GitHub
  A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
  ☆51Jan 15, 2025Updated last year
• johandahlberg / awesome-10x-genomics

  View on GitHub
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆86Jan 7, 2026Updated last month
• BGI-Qingdao / stlfr2supernova_pipeline

  View on GitHub
  A pipeline to de novo assemble the stLFR reads using Supernova Assembler
  ☆20Feb 22, 2023Updated 2 years ago
• ernstlab / ChromTime

  View on GitHub
  Modeling Spatio-temporal Dynamics of Chromatin Marks
  ☆12Aug 2, 2021Updated 4 years ago
• wtsi-hpag / Scaff10X

  View on GitHub
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Aug 2, 2022Updated 3 years ago
• phasegenomics / polar_star

  View on GitHub
  long-read depth breaking
  ☆11Apr 19, 2018Updated 7 years ago
• VeryAmazed / digest

  View on GitHub
  ☆16Aug 8, 2025Updated 6 months ago
• LeilyR / Multi-genome-Reference

  View on GitHub
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆13Aug 23, 2018Updated 7 years ago
• guifengwei / ChromHMM_mESC_mm10

  View on GitHub
  Chromatin States Map in mouse embryonic stem cell
  ☆19Apr 11, 2018Updated 7 years ago
• BorgwardtLab / networkGWAS

  View on GitHub
  Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …
  ☆17Jun 28, 2023Updated 2 years ago
• biobakery / anadama2

  View on GitHub
  AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your wo…
  ☆12Sep 8, 2025Updated 5 months ago
• MarioniLab / MouseGastrulationData

  View on GitHub
  Clone of the Bioconductor repository for the MouseGastrulationData package.
  ☆13Jan 24, 2024Updated 2 years ago
• tetramerFreqs / Binning

  View on GitHub
  Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…
  ☆17Feb 17, 2022Updated 3 years ago
• sestaton / tephra

  View on GitHub
  A tool for discovering transposable elements and describing patterns of genome evolution
  ☆31Apr 23, 2023Updated 2 years ago
• sankaranlab / mito-genotyping

  View on GitHub
  Repo for scripts for Ludwig et al mtDNA genotyping
  ☆16Nov 22, 2019Updated 6 years ago
• xunchen85 / ERVcaller

  View on GitHub
  ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…
  ☆13Jan 10, 2024Updated 2 years ago
• yeban / ncbi-blast-dbs

  View on GitHub
  Fast download BLAST databases from NCBI.
  ☆35Feb 7, 2024Updated 2 years ago
• arshajii / ema

  View on GitHub
  Fast & accurate alignment of barcoded short-reads
  ☆32Jun 29, 2023Updated 2 years ago
• rschwess / tutorial_dl_for_genomics

  View on GitHub
  A short tutorial to using DL and keras for genomics with sequence data.
  ☆15Dec 3, 2020Updated 5 years ago
• WangPeng-Lab / scGCO

  View on GitHub
  Single-cell Graph Cuts Optimization
  ☆16Apr 27, 2024Updated last year
• bcgsc / physlr

  View on GitHub
  Construct a Physical Map from Linked Reads
  ☆18Apr 5, 2024Updated last year
• wurmlab / genevalidator

  View on GitHub
  GeneValidator: Identify problems with predicted genes
  ☆49Mar 1, 2024Updated last year
• JinfengChen / RelocaTE2

  View on GitHub
  RelocaTE2
  ☆18Oct 6, 2023Updated 2 years ago
• owensgl / haploblocks

  View on GitHub
  Scripts and resources for the haploblocks manuscript
  ☆18Mar 20, 2020Updated 5 years ago
• dieterich-lab / single-cell-nanopore

  View on GitHub
  Workflow for Nanopore Sequencing of 10x single cell libraries
  ☆19Mar 20, 2025Updated 10 months ago
• nanoporetech / pyspoa

  View on GitHub
  Python bindings to spoa
  ☆22Dec 3, 2025Updated 2 months ago
• anuradhawick / MetaBCC-LR

  View on GitHub
  Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
  ☆20Sep 10, 2024Updated last year
• yangli557 / AnnoSINE

  View on GitHub
  SINE annotation tool for plant genomes
  ☆18Jan 21, 2024Updated 2 years ago
• mtmorgan / TENxGenomics

  View on GitHub
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Aug 2, 2018Updated 7 years ago
• 4dn-dcic / pairix

  View on GitHub
  1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
  ☆92Jan 28, 2025Updated last year
• Oshlack / necklace

  View on GitHub
  Combine reference and assembled transcriptomes for RNA-Seq analysis
  ☆23Feb 12, 2020Updated 6 years ago
• NYU-BFX / lncRNA-screen

  View on GitHub
  lncRNA-screen
  ☆25Apr 19, 2017Updated 8 years ago
• mpdunne / orthofiller

  View on GitHub
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Dec 1, 2022Updated 3 years ago
• scottgigante / haplotyped-methylome

  View on GitHub
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Mar 4, 2019Updated 6 years ago
• genomecuration / JAMg

  View on GitHub
  Just Annotate My Genome
  ☆19Sep 17, 2024Updated last year
• slowkow / CENTIPEDE.tutorial

  View on GitHub
  How to use CENTIPEDE to determine if a transcription factor is bound.
  ☆26Mar 18, 2018Updated 7 years ago
• BioMedBigDataCenter / VENAS

  View on GitHub
  ☆16Aug 17, 2023Updated 2 years ago
• 4dn-dcic / docker-4dn-hic

  View on GitHub
  Docker for 4DN Hi-C processing pipeline
  ☆61Nov 26, 2024Updated last year
• qiyunlab / binarena

  View on GitHub
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆33Aug 22, 2024Updated last year