ucdavis-bioinformatics / proc10xGLinks
processing 10x genomics reads
☆26Updated 5 years ago
Alternatives and similar repositories for proc10xG
Users that are interested in proc10xG are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- Long-read splice alignment with high accuracy☆63Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 10 months ago
- ☆30Updated 4 years ago
- ☆38Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- ☆45Updated 8 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Structural variant merging tool☆55Updated last year
- ☆35Updated last year
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- ☆51Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Structural variant caller☆55Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last week
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Evolutionary Transcriptomics with R☆45Updated this week