ucdavis-bioinformatics / proc10xG
processing 10x genomics reads
☆24Updated 5 years ago
Alternatives and similar repositories for proc10xG:
Users that are interested in proc10xG are comparing it to the libraries listed below
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆29Updated 3 years ago
- Reconstruction of focal amplifications with long reads☆17Updated this week
- ☆21Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- Simple library/pipeline to generate and handle Hi-C data.☆36Updated 2 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- toolkit to process gtf files☆16Updated 3 years ago
- Evolutionary Transcriptomics with R☆41Updated last week
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆18Updated last year
- ☆35Updated 5 years ago
- ☆25Updated 2 weeks ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆20Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago