Nanguage / bioViewLinks
Readability enhancement tool for bioinformatics data file format
☆30Updated 5 years ago
Alternatives and similar repositories for bioView
Users that are interested in bioView are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆70Updated 7 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 6 months ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Updated 9 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A high-performance search engine for large-scale genomic interval datasets☆19Updated 3 years ago
- Visualization tool for genetic reassortment☆21Updated 3 months ago
- Integrative analysis of structural variations.☆40Updated last year
- interactive plots for differential expression analysis☆32Updated last month
- ☆18Updated 3 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 6 months ago