jasdumas / shinyGEOLinks
Gene Expression Omnibus Analysis with Shiny
☆41Updated 3 years ago
Alternatives and similar repositories for shinyGEO
Users that are interested in shinyGEO are comparing it to the libraries listed below
Sorting:
- R interface to morpheus.js heatmap widget☆38Updated 4 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆90Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 5 months ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Updated last month
- An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app☆49Updated 4 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆43Updated 5 months ago
- This python package is for transitioning bioconductor from SVN to git☆14Updated 2 years ago
- Automate package and project setup for Bioconductor packages☆53Updated 2 months ago
- An R Interface to the ImmuneSpace database portal☆24Updated last year
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- Source code for ScanGEO Shiny App☆15Updated 3 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- Modular & interactive analysis components for bioinformatics☆17Updated last month
- [DEPRECATED] Docker containers for Bioconductor☆49Updated 2 years ago
- ☆10Updated 4 years ago
- Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST☆16Updated 7 years ago
- Explore design matrices interactively with R/Shiny☆37Updated last month
- Example R script to use Cytoscape via RESTful API module.☆28Updated 6 years ago
- Bioconductor package for management of multi-assay data☆72Updated last month
- Template for building a bioconductor workshop package using github actions☆20Updated 10 months ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Updated 8 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated 6 months ago
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆21Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 3 weeks ago