AlgoLab / complexCGR
complex Chaos Game Representation for DNA sequences
☆18Updated this week
Alternatives and similar repositories for complexCGR:
Users that are interested in complexCGR are comparing it to the libraries listed below
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆49Updated last month
- Efficient calculation of phylogenetic distance matrices.☆47Updated 6 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆27Updated 11 months ago
- convert variation graph alignments to coverage maps over nodes☆23Updated 2 months ago
- ☆15Updated last year
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated last week
- Python bindings to spoa☆20Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- distance based phylogenetic placement☆26Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆27Updated 7 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 9 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆16Updated last month
- Differential k-mer analysis☆34Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 4 months ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 4 months ago
- GTDB => NCBI☆13Updated 4 months ago
- ☆41Updated last month
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆33Updated this week
- Optimal sequence-to-graph alignment with recombinations☆32Updated last month
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Python bindings for the TaxonKit library☆35Updated last week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆58Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆21Updated 5 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆47Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆49Updated 4 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆11Updated 5 months ago
- ☆16Updated last month
- A tool for simulating random mutations in any genome☆38Updated last year
- Pipeline which removes human DNA from microbial shotgun samples.☆16Updated 6 months ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆11Updated last year