Alternatives and similar repositories for complexCGR

Users that are interested in complexCGR are comparing it to the libraries listed below

• algbio / emerald
  EMERALD calculates safety-windows by exploring the suboptimal alignment space
  ☆17Updated this week
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆21Updated last year
• refresh-bio / clusty
  ☆11Updated 2 weeks ago
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆33Updated last year
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 3 weeks ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated this week
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated last month
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆18Updated 2 months ago
• nanoporetech / pyspoa
  Python bindings to spoa
  ☆20Updated last year
• sanger-pathogens / pymummer
  Python3 module for running MUMmer and reading the output
  ☆32Updated 2 months ago
• mbhall88 / NanoVarBench
  Evaluating Nanopore-based bacterial variant calling
  ☆19Updated last month
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆38Updated last year
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆51Updated 2 weeks ago
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆63Updated 8 months ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆32Updated 3 months ago
• rnajena / bertax
  Taxonomic classification of DNA sequences
  ☆53Updated 11 months ago
• bioinfo-ut / PhenotypeSeeker
  Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
  ☆19Updated last month
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆50Updated 4 months ago
• balabanmetin / apples
  distance based phylogenetic placement
  ☆27Updated last year
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆29Updated 7 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 3 weeks ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated last month
• lrobidou / KFC
  ☆18Updated 3 months ago
• gcgreenberg / LexicHash
  A novel method for sequence similarity estimation
  ☆28Updated last year
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆40Updated 4 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago