AlgoLab / complexCGRLinks
complex Chaos Game Representation for DNA sequences
☆19Updated 3 months ago
Alternatives and similar repositories for complexCGR
Users that are interested in complexCGR are comparing it to the libraries listed below
Sorting:
- ☆12Updated last month
- ☆15Updated last year
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- MGnify API toolkit☆20Updated 5 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated last year
- A novel method for sequence similarity estimation☆28Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- distance based phylogenetic placement☆27Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆51Updated this week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆51Updated 2 months ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆29Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 8 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆26Updated 2 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆22Updated last week
- Python language bindings for bwa☆10Updated 2 weeks ago
- A FASTA/FASTQ format parser library☆20Updated last year
- A tool for simulating random mutations in any genome☆42Updated last year
- Pipeline which removes human DNA from microbial shotgun samples.☆16Updated 2 months ago
- Compute strain abundance in a defined microbial community☆10Updated last year
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆11Updated this week
- Just another minhash implementation.☆12Updated last week
- Protein orthologous group assignment with deep learning☆27Updated 5 months ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated this week
- Singular Genomics Demultiplexing Tool☆16Updated last year
- fast sequence evolution simulation for SARS-CoV-2 and similar☆20Updated 3 months ago
- ☆18Updated 5 months ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 3 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆36Updated last year