AlgoLab / complexCGRLinks
complex Chaos Game Representation for DNA sequences
☆19Updated 2 months ago
Alternatives and similar repositories for complexCGR
Users that are interested in complexCGR are comparing it to the libraries listed below
Sorting:
- ☆12Updated last month
- GCN classifier for phage taxanomy classification☆31Updated 7 months ago
- Python bindings for the TaxonKit library☆41Updated last month
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆26Updated last month
- MGnify API toolkit☆20Updated 4 months ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 2 months ago
- Protein orthologous group assignment with deep learning☆27Updated 5 months ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated this week
- ☆11Updated 3 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆35Updated last year
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆19Updated 2 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆12Updated last year
- GTDB => NCBI☆14Updated 7 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆22Updated 3 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆13Updated 4 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 6 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 10 months ago
- ☆17Updated 3 years ago
- ☆30Updated 6 months ago
- distance based phylogenetic placement☆27Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 9 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- Efficient calculation of phylogenetic distance matrices.☆48Updated 8 months ago
- Pipeline which removes human DNA from microbial shotgun samples.☆16Updated last month
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated last week
- fast sequence evolution simulation for SARS-CoV-2 and similar☆19Updated 2 months ago