[Briefings in Bioinformatics'20] Integrating multi-network topology for gene function prediction using deep neural networks
☆14Sep 5, 2019Updated 6 years ago
Alternatives and similar repositories for DeepMNE-CNN
Users that are interested in DeepMNE-CNN are comparing it to the libraries listed below
Sorting:
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning☆25Jan 26, 2024Updated 2 years ago
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 6 months ago
- ☆20Oct 29, 2025Updated 4 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Feb 3, 2023Updated 3 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- visualize CNV data from targeted capture based sequencing data☆34May 10, 2021Updated 4 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Mar 27, 2019Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 7 years ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- R Package for Bootstrap Unit Root Tests☆10May 5, 2025Updated 10 months ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- ☆11Feb 27, 2026Updated last week
- Deep Network Fusion (deepNF)☆32May 4, 2020Updated 5 years ago
- ☆10Sep 29, 2023Updated 2 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆43Jul 10, 2024Updated last year
- Gene Regulatory Graph Neural Networks☆36Jun 21, 2022Updated 3 years ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 12 years ago
- Spatial Seemingly Unrelated Regressions☆11Apr 22, 2022Updated 3 years ago
- Official PyTorch Implementation of Federated Learning with Positive and Unlabeled Data☆10Aug 12, 2022Updated 3 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆17Feb 2, 2026Updated last month
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- ☆14Dec 18, 2024Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- This repository contains original codes for major analyses in the manuscript 'The multi-kingdom airway microbiome mediates the interactio…☆13Apr 27, 2024Updated last year
- Microbial marker identification from cross-cohort datasets☆14May 15, 2024Updated last year
- An R package for adjusting Stochastic Block Models from networks data sampled under various missing data conditions☆12Mar 13, 2025Updated 11 months ago
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Feb 15, 2026Updated 2 weeks ago
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- ☆12May 5, 2023Updated 2 years ago
- ☆11May 5, 2023Updated 2 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆18Nov 18, 2025Updated 3 months ago
- ☆11Aug 21, 2024Updated last year
- ☆11Oct 6, 2025Updated 5 months ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Feb 6, 2026Updated last month
- Python implementation of the CSP algorithm☆11Mar 24, 2022Updated 3 years ago
- Pipeline for structured coupled matrix-tensor factorization of EEG-fMRI data☆10Mar 12, 2021Updated 4 years ago
- 🧪 Optimized protocol for m6A-SAC-seq☆11Jun 16, 2025Updated 8 months ago