Tools for analysis of sequence divergence
☆15Oct 6, 2026Updated last week
Alternatives and similar repositories for DiverseSeq
Users that are interested in DiverseSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python project to validate a phylogenetic fitted models is within the limits of inference☆20Apr 13, 2026Updated 6 months ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Jun 25, 2026Updated 3 months ago
- A new approach to obtaining local copies of ensembl data☆25Sep 11, 2026Updated last month
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆51Updated this week
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆48Jul 12, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comparative Genomics Toolkit 3☆139Updated this week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated last month
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 4, 2026Updated last month
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning☆25Jan 26, 2024Updated 2 years ago
- ☆16Aug 16, 2025Updated last year
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 11 months ago
- Wastewater-Based Epidemiology using Phylogenetic Placements☆19Sep 7, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 10 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆26Aug 9, 2025Updated last year
- machine learning for genomic variants☆147Jun 23, 2026Updated 3 months ago
- Distance-based Phylogenetic Placer☆24Sep 8, 2026Updated last month
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 2 months ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16May 7, 2026Updated 5 months ago
- Trim adapters from MGI sequence data☆14Jun 11, 2023Updated 3 years ago
- Deep Clustering Learning☆12Aug 8, 2019Updated 7 years ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- Beacon v2 Reference Implementation (API)☆17Dec 13, 2024Updated last year
- ☆35Sep 10, 2024Updated 2 years ago
- Quickly get coverage statistics given reads and an assembly☆18May 13, 2024Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Assembling phage particles one protein at a time☆26Aug 3, 2026Updated 2 months ago
- A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecular…☆28Sep 23, 2026Updated 3 weeks ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- High throughput tool for tall and wide multiple sequence alignment.☆32Sep 26, 2026Updated 2 weeks ago
- Fungal Genome Mapping Pipeline☆19Jun 9, 2019Updated 7 years ago
- Experimenting with cross-platform clipboard support for files in Rust☆14Dec 31, 2024Updated last year
- Python implementation of label propagation☆19Jun 29, 2016Updated 10 years ago
- ☆15Dec 15, 2025Updated 10 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 7 months ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆19Jul 19, 2013Updated 13 years ago