Alternatives and similar repositories for HNSCC_scRNA

Users that are interested in HNSCC_scRNA are comparing it to the libraries listed below

• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆73Updated 2 years ago
• Sijin-ZhangLab / PanMyeloid
  ☆110Updated 5 years ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago
• tanlabcode / spatial-bonemarrow-atlas
  This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…
  ☆86Updated last year
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆138Updated 4 months ago
• yqq-chen / CRC_ICB
  ☆32Updated last year
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 4 months ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆79Updated last year
• ma-jq / B
  ☆28Updated last year
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆128Updated last year
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆69Updated 2 years ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆54Updated last year
• Junjie-Hu / NSCLC-immunotherapy
  ☆27Updated last year
• aliceygao / pan-Fibroblast
  ☆51Updated last year
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆84Updated 2 years ago
• bio-Pixel / panVC
  ☆54Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆110Updated 6 months ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆40Updated last year
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• Chuxj / CRC-atlas
  ☆31Updated last year
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆23Updated 2 years ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆85Updated 2 years ago
• JarningGau / ProjectSVR
  A package for reference mapping and nice visualization
  ☆22Updated last year
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆61Updated 11 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 8 months ago
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆49Updated 2 years ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆64Updated 2 years ago