widdowquinn / find_differential_primersLinks
Code for design of diagnostic PCR primers, and metabarcoding markers.
☆62Updated 2 years ago
Alternatives and similar repositories for find_differential_primers
Users that are interested in find_differential_primers are comparing it to the libraries listed below
Sorting:
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Microbiome classification pipeline☆65Updated 7 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆80Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆42Updated 4 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- A genome alignment and visualization system☆32Updated 5 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ☆53Updated 4 years ago
- VAPiD: Viral Annotation and Identification Pipeline☆55Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated last week
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆28Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago