widdowquinn / find_differential_primersLinks
Code for design of diagnostic PCR primers, and metabarcoding markers.
☆62Updated last year
Alternatives and similar repositories for find_differential_primers
Users that are interested in find_differential_primers are comparing it to the libraries listed below
Sorting:
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Microbiome classification pipeline☆66Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆41Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆39Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- ☆49Updated 9 months ago
- Visualize whole genome alignments as linear maps☆73Updated 10 months ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- de.NBI Nanopore Training Course☆20Updated last month
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Annotate DNA sequences for Gene Ontology terms☆41Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Long-read metagenomic analysis☆103Updated last year
- Simple bacterial assembly and annotation pipeline☆76Updated last week
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆78Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- A genome alignment and visualization system☆28Updated 4 years ago