widdowquinn / find_differential_primers
Code for design of diagnostic PCR primers, and metabarcoding markers.
☆61Updated last year
Alternatives and similar repositories for find_differential_primers
Users that are interested in find_differential_primers are comparing it to the libraries listed below
Sorting:
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 10 months ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- ☆52Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆77Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆66Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Visualize whole genome alignments as linear maps☆72Updated 7 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Annotate DNA sequences for Gene Ontology terms☆41Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆49Updated last year
- de.NBI Nanopore Training Course☆20Updated 2 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago
- MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity☆40Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Documentation for Evolview☆28Updated 3 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 4 years ago
- ☆82Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated last year