Alternatives and similar repositories for PRIMUS:

Users that are interested in PRIMUS are comparing it to the libraries listed below

• okunator / cellseg_gsontools
  Feature extraction from GEOJson nuclei and tissue segmentation maps
  ☆14Updated 7 months ago
• nf-core / imcyto
  Image Mass Cytometry analysis pipeline
  ☆25Updated 2 months ago
• AI4SCR / ATHENA
  ☆31Updated 2 months ago
• ElementoLab / utag
  ☆34Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 4 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆87Updated last week
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆36Updated last week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆17Updated last week
• dpeerlab / ENVI
  ☆46Updated this week
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆34Updated 10 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆20Updated 8 months ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆16Updated 2 months ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆58Updated this week
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆14Updated last month
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 3 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆25Updated 5 months ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆33Updated 3 weeks ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆24Updated this week
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 11 months ago
• whhudson / spatialTCR
  ☆13Updated 3 years ago
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆55Updated 3 weeks ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆29Updated 2 months ago
• HiDiHlabs / ssam
  ☆28Updated 5 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆77Updated last year
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆57Updated 5 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆40Updated 3 years ago
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆112Updated last week
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆26Updated last month
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆72Updated 2 years ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 6 months ago