slagtermaarten / LOHHLA
Fork of https://bitbucket.org/mcgranahanlab/lohhla
☆16Updated 5 years ago
Alternatives and similar repositories for LOHHLA:
Users that are interested in LOHHLA are comparing it to the libraries listed below
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated 3 weeks ago
- ☆13Updated 7 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last month
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- ☆19Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆13Updated 9 years ago
- DriverPower☆26Updated last month
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 9 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated 2 weeks ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 weeks ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆10Updated last year
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated last week
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago