wwylab / MuSELinks
Somatic point mutation caller
☆28Updated last month
Alternatives and similar repositories for MuSE
Users that are interested in MuSE are comparing it to the libraries listed below
Sorting:
- ☆22Updated 5 months ago
- BISulfite-seq CUI Toolkit☆19Updated 3 weeks ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ☆13Updated 7 years ago
- QDNAseq bin annotation for hg38☆15Updated 2 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 3 weeks ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- ☆19Updated 2 years ago
- ☆18Updated last month
- ☆24Updated 9 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- allele specific DNA methylation haplotype region☆14Updated last year
- Reconstruction of focal amplifications with long reads☆21Updated last week
- ☆36Updated 2 years ago
- DriverPower☆26Updated 4 months ago
- ☆26Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago