simple jobs submission via command-line for AWS batch
☆80May 21, 2019Updated 7 years ago
Alternatives and similar repositories for batchit
Users that are interested in batchit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.☆202Jun 4, 2020Updated 6 years ago
- ☆15Jan 19, 2018Updated 8 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Oct 14, 2026Updated 2 weeks ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Feb 5, 2023Updated 3 years ago
- ☆17Oct 16, 2017Updated 9 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- sort genomic data☆36Oct 21, 2026Updated last week
- Stupid Simple Structural Variant View☆26Nov 21, 2016Updated 9 years ago
- Visualization and charting JS library for streaming genomic data☆19Dec 4, 2024Updated last year
- This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…☆40Jan 11, 2024Updated 2 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 4 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- HapMuC: Somatic Mutation Calling Using Heterozygous Germ Line Variants Near Candidate Mutations (Bioinformatics)☆10Jun 7, 2015Updated 11 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Oct 23, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 13 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- Simple tool to verticalize text delimited files.☆36May 6, 2024Updated 2 years ago
- ☆28Feb 17, 2021Updated 5 years ago
- R package AssotesteR☆13Dec 18, 2013Updated 12 years ago
- A PostgreSQL foreign data wrapper for VCF files.☆18May 8, 2017Updated 9 years ago
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 11 months ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Amazon Web Services Operator Interface☆69Feb 1, 2026Updated 8 months ago
- Ancestry and Kinship Tools☆70Apr 20, 2026Updated 6 months ago
- Create QC and summary reports for Alevin output☆31Jul 21, 2026Updated 3 months ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 9 years ago