base2genomics / batchitLinks
simple jobs submission via command-line for AWS batch
☆80Updated 6 years ago
Alternatives and similar repositories for batchit
Users that are interested in batchit are comparing it to the libraries listed below
Sorting:
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆69Updated last week
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Examples for the Google Genomics Pipelines API.☆50Updated 7 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Updated 7 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆45Updated 2 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- AWS Quick Start Team☆24Updated 11 months ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- ☆43Updated 9 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Parse Illumina sample sheets with Python☆50Updated last year
- BaseSpace Python SDK☆37Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago
- Linter rules for Nextflow DSL scripts☆34Updated last month
- conda recipes for genomic data☆84Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- Visualization and charting JS library for streaming genomic data☆19Updated 9 months ago
- A configurable de novo assembly pipeline☆28Updated 9 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 10 years ago