simple jobs submission via command-line for AWS batch
☆80May 21, 2019Updated 6 years ago
Alternatives and similar repositories for batchit
Users that are interested in batchit are comparing it to the libraries listed below
Sorting:
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- ☆15Jan 19, 2018Updated 8 years ago
- ☆16Oct 16, 2017Updated 8 years ago
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 8 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Apr 29, 2025Updated 10 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 9 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.☆202Jun 4, 2020Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- ☆43Apr 20, 2016Updated 9 years ago
- IMGT segment library converted to RepSeq.IO JSON format☆13Mar 21, 2023Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Ancestry and Kinship Tools☆70Nov 16, 2022Updated 3 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated 3 weeks ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- ☆21Dec 26, 2025Updated 2 months ago
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- ☆20Aug 18, 2020Updated 5 years ago
- Histosketching Using Little Kmers☆57May 25, 2023Updated 2 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 3 months ago
- Reference-based compression of SRA data☆37Mar 26, 2013Updated 12 years ago