Python module to read binary Plink files.
☆17Mar 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for pyplink
Users that are interested in pyplink are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Applying polygenic scores (PGS) on imputed genotypes☆34Oct 28, 2025Updated 5 months ago
- ☆10Jun 13, 2020Updated 5 years ago
- PLINK reader for Python.☆89May 12, 2025Updated 11 months ago
- ☆11Feb 14, 2023Updated 3 years ago
- A small C and Python library for reading PLINK genotype files.☆51Nov 27, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆18Mar 21, 2023Updated 3 years ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- Documentation on new GWAS Summary Statistics Standard☆24Nov 19, 2025Updated 4 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆55Dec 19, 2023Updated 2 years ago
- Specification for the GWAS-VCF format (manuscript in preparation)☆26Aug 3, 2021Updated 4 years ago
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 4 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Partners Biobank genomics data QC☆30Mar 31, 2020Updated 6 years ago
- A BGEN file format reader.☆13Jun 17, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single cell Type Enrichment Analysis for Phenotypes (STEAP)☆14Jun 16, 2021Updated 4 years ago
- ☆24Dec 10, 2018Updated 7 years ago
- Genotype-based Prediction (GenoPred)☆77Mar 19, 2026Updated 3 weeks ago
- Pedigree simulator☆30Dec 15, 2025Updated 4 months ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- A python library for accessing 2bit files☆21Jan 21, 2025Updated last year
- Report reverse and ambiguous strand SNPs in GWAS data☆34May 15, 2019Updated 6 years ago
- A Scientometric Review of Genome Wide Association Studies☆40Jun 30, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Oct 10, 2025Updated 6 months ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Pangenome Mutation-Annotated Networks☆40Apr 9, 2026Updated last week
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated last month
- Teaching modules for Human Genome Variation Lab.☆21Jun 6, 2025Updated 10 months ago
- A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.☆43Dec 14, 2015Updated 10 years ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆27May 21, 2022Updated 3 years ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Jun 17, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A list of awesome tools for complex trait genetics.☆85Jan 28, 2025Updated last year
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- ☆38Sep 5, 2024Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- Instrumental Variable Quantile Regression☆12Jul 17, 2023Updated 2 years ago
- Library for biomedical knowledge manipulation☆24May 27, 2014Updated 11 years ago