lemieuxl / pyplinkLinks
Python module to read binary Plink files.
☆17Updated last year
Alternatives and similar repositories for pyplink
Users that are interested in pyplink are comparing it to the libraries listed below
Sorting:
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- ☆27Updated 7 months ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆40Updated 4 months ago
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 7 years ago
- ☆33Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Convert GWAS summary statistics to VCF☆48Updated 2 years ago
- ☆40Updated 6 months ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last month
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Genetic maps interpolated to sites in the 1000 Genomes project☆51Updated 10 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago