VariantEffect / mavetools
Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
☆10Updated 4 months ago
Related projects: ⓘ
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 2 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Updated 4 years ago
- Kdrew's scripts for handling protein complex map data☆12Updated 9 months ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆26Updated last month
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- ☆13Updated 2 months ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Updated 11 months ago
- Summary statistics for repertoires☆16Updated last year
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆13Updated 8 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆10Updated 5 months ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated 6 months ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆9Updated last year
- EARRINGS: An efficient and ingenious adapter removal design for large-scale NGS meta-analyses☆9Updated 3 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆25Updated last year
- PRedictor of IMmunogenic Epitopes☆16Updated 4 months ago
- CoV-Seq: COVID-19 Genomic Sequence Database and Visualization☆14Updated 3 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 2 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆14Updated last week
- A GenePattern module for running the ssGSEA method☆11Updated last year
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated last year
- Javascript package for embedding sequence logos☆15Updated last year
- Bioinformatics course (WSBIM1322)☆15Updated 9 months ago
- Deep learning model to predict degron sequences☆18Updated last year
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆20Updated 3 months ago
- a modified version of FunSeq2 using new data context☆13Updated 2 years ago