Alternatives and similar repositories for mzIdentML:

Users that are interested in mzIdentML are comparing it to the libraries listed below

• HUPO-PSI / psi-ms-CV
  HUPO-PSI mass spectrometry CV
  ☆29Updated this week
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆46Updated this week
• chhh / batmass
  Mass spectrometry data visualization
  ☆36Updated 4 years ago
• gtluu / timsconvert
  ☆35Updated this week
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆64Updated last year
• HUPO-PSI / mzTab
  mzTab Reporting MS-based Proteomics and Metabolomics Results
  ☆39Updated 2 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆45Updated last month
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆34Updated 2 weeks ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆18Updated last week
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆80Updated 3 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• mafreitas / tdf2mzml
  ☆25Updated last year
• PNNL-Comp-Mass-Spec / Thermo-Raw-File-Reader
  .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
  ☆38Updated 4 months ago
• statisticalbiotechnology / diffacto
  ☆13Updated 10 months ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆39Updated 8 months ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated last year
• mobiusklein / ms_deisotope
  A library for deisotoping and charge state deconvolution of complex mass spectra
  ☆35Updated 2 weeks ago
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆52Updated 3 years ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆19Updated 2 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated last week
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated 3 weeks ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆44Updated last week
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆26Updated last week
• HUPO-PSI / mzQC
  Reporting and exchange format for mass spectrometry quality control data
  ☆28Updated last week
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 7 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆23Updated last month
• MannLabs / timsrust
  ☆25Updated 2 weeks ago
• UWPR / Lorikeet
  Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.
  ☆17Updated last year