HUPO-PSI / mzIdentMLView external linksLinks
Repository for mzIdentML and the corresponding examples
☆26Jan 16, 2026Updated 3 weeks ago
Alternatives and similar repositories for mzIdentML
Users that are interested in mzIdentML are comparing it to the libraries listed below
Sorting:
- Reporting and exchange format for mass spectrometry quality control data☆32Dec 12, 2025Updated 2 months ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- Repository for mzML and the corresponding examples☆34Apr 5, 2024Updated last year
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆17Sep 7, 2023Updated 2 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Oct 31, 2025Updated 3 months ago
- HUPO-PSI mass spectrometry CV☆40Jan 30, 2026Updated 2 weeks ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Aug 9, 2024Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData repres…☆12Oct 23, 2019Updated 6 years ago
- PIA - Protein Inference Algorithms☆24Jan 22, 2026Updated 3 weeks ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 4 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆67Jan 6, 2026Updated last month
- Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.☆12Feb 11, 2025Updated last year
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 7 months ago
- Thermo MSFileReader Python bindings☆69May 4, 2021Updated 4 years ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆45Apr 1, 2025Updated 10 months ago
- Democratizing ML in proteomics☆52Feb 2, 2026Updated last week
- Library for mass spectrometry projects☆27Updated this week
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 6 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Dec 22, 2025Updated last month
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆12Aug 26, 2022Updated 3 years ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆60Sep 17, 2025Updated 4 months ago
- C# Mass Spectrometry Library☆38Jun 14, 2022Updated 3 years ago
- ☆67Mar 17, 2025Updated 10 months ago
- Computational analysis for mass spectrometry-based proteomics data☆11Apr 25, 2016Updated 9 years ago
- ☆15May 30, 2025Updated 8 months ago
- Implementations of compression schemes for numeric data from mass spectrometers.☆13Mar 3, 2021Updated 4 years ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated last year
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Jan 20, 2026Updated 3 weeks ago
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Oct 17, 2018Updated 7 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- ☆13Mar 19, 2024Updated last year
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆107Feb 6, 2026Updated last week
- Paper collection about de novo peptide Sequening☆21Feb 5, 2025Updated last year
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆38Dec 17, 2025Updated last month