cox-labs / CoxLab_Bug_ReportingLinks
MaxQuant and Perseus Bug Reporting
☆11Updated 9 months ago
Alternatives and similar repositories for CoxLab_Bug_Reporting
Users that are interested in CoxLab_Bug_Reporting are comparing it to the libraries listed below
Sorting:
- PDV: an integrative proteomics data viewer☆59Updated 6 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated last week
- ☆24Updated 2 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Updated 2 months ago
- ☆38Updated 5 months ago
- Differential Expression Analysis tool box R lang package for omics data☆47Updated 3 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated 3 months ago
- ☆67Updated last year
- Report processing and protein quantification for MS-based proteomics☆52Updated 2 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Updated 2 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last week
- A library for QC report based on MultiQC framework☆26Updated this week
- R package - MSstats☆88Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 10 months ago
- R-Shiny GUI integrated with the MSstats package family☆19Updated last week
- The repo for LFQ-Analyst☆30Updated last year
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Python package for investigating the structural context of PTMs☆28Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- ☆55Updated 4 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆38Updated last year
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Updated last year
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Updated 7 months ago
- Python client for PRIDE Archive Rest API.☆29Updated 3 weeks ago
- Absolute quantification package based on quantms.io☆16Updated 3 months ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆26Updated 2 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆40Updated 10 months ago