Alternatives and similar repositories for Scout

Users that are interested in Scout are comparing it to the libraries listed below

• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆119Updated 2 weeks ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆128Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated 3 weeks ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated 3 months ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆88Updated 2 weeks ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆97Updated last year
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated last month
• MannLabs / alphadia
  modular & open DIA search
  ☆73Updated this week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated this week
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆58Updated 3 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆66Updated last month
• pFindStudio / pGlyco3
  ☆20Updated 5 months ago
• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆146Updated last week
• CompOmics / ThermoRawFileParser
  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
  ☆216Updated 3 weeks ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆46Updated 2 years ago
• thermofisherlsms / RawFileReader
  ☆59Updated 4 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆81Updated 11 months ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 4 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆47Updated 5 months ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆239Updated this week
• vdemichev / DiaNN
  DIA-NN - a universal automated software suite for DIA proteomics data analysis.
  ☆355Updated last month
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆87Updated last year
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 6 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 4 months ago
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆64Updated 2 years ago
• mafreitas / tdf2mzml
  ☆26Updated last year
• bittremieux-lab / spectrum_utils
  Python package for efficient mass spectrometry data processing and visualization
  ☆152Updated 3 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆79Updated 3 years ago