diogobor / Scout
MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
☆19Updated 4 months ago
Alternatives and similar repositories for Scout:
Users that are interested in Scout are comparing it to the libraries listed below
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆62Updated this week
- modular & open DIA search☆66Updated this week
- Democratizing ML in proteomics☆34Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆112Updated 9 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆81Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆50Updated last week
- Deep learning framework for proteomics☆122Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆40Updated last week
- Instrument Application Programming Interface☆45Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆47Updated 2 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆86Updated 2 weeks ago
- ☆55Updated 2 weeks ago
- ☆26Updated last year
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆42Updated 3 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆74Updated 3 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆29Updated last month
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated last month
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆83Updated this week
- Report processing and protein quantification for MS-based proteomics☆41Updated last year
- A tool for summarizing open search results☆16Updated 2 weeks ago
- A list of tools on proteomics using deep learning☆93Updated 10 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- Matthew The's implementation of MaRaCluster☆11Updated 2 years ago
- Python package for investigating the structural context of PTMs☆28Updated 2 months ago
- ☆36Updated 2 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆66Updated this week
- ☆13Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆56Updated last week