diogobor / ScoutLinks
MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
☆21Updated 3 months ago
Alternatives and similar repositories for Scout
Users that are interested in Scout are comparing it to the libraries listed below
Sorting:
- Democratizing ML in proteomics☆44Updated 2 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 4 months ago
- Deep learning framework for proteomics☆132Updated last month
- modular & open DIA search☆80Updated last week
- A list of tools on proteomics using deep learning☆106Updated last year
- ☆63Updated 7 months ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆226Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 4 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆50Updated this week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆163Updated last week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- A deep learning toolkit for mass spectrometry☆83Updated last year
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆90Updated 2 years ago
- Instrument Application Programming Interface☆51Updated last month
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆390Updated last month
- A cross-platform proteomics data analysis suite☆261Updated last week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated last week
- ☆20Updated 8 months ago
- ☆27Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- Report processing and protein quantification for MS-based proteomics☆49Updated 2 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆141Updated 2 weeks ago
- ☆13Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 2 weeks ago