wilhelm-lab / dlomixLinks
Python framework for Deep Learning in Proteomics
☆38Updated this week
Alternatives and similar repositories for dlomix
Users that are interested in dlomix are comparing it to the libraries listed below
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- ☆21Updated 11 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆53Updated last week
- Democratizing ML in proteomics☆52Updated last week
- Deep learning framework for proteomics☆143Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 11 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Updated 2 weeks ago
- modular & open DIA search☆100Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated 3 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆80Updated 2 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 3 months ago
- Instrument Application Programming Interface☆51Updated 4 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 3 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆20Updated 2 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Updated 7 months ago
- Python package for investigating the structural context of PTMs☆28Updated last year
- ☆45Updated 10 months ago
- A list of tools on proteomics using deep learning☆106Updated last year
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated last week
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Updated 3 months ago
- MS/MS prediction for peptides☆24Updated 5 years ago
- Matthew The's implementation of MaRaCluster☆11Updated 7 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Updated 2 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆67Updated 3 weeks ago
- A deep learning toolkit for mass spectrometry☆86Updated 3 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated last week