Alternatives and similar repositories for NOVOLoci

Users that are interested in NOVOLoci are comparing it to the libraries listed below

• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• zheminzhou / pHierCC
  Hierarchical clustering of cgMLST
  ☆11Updated last year
• popitsch / nanopanel2
  Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
  ☆11Updated 4 years ago
• cmdoret / tinycov
  Command line tool to plot genomic coverage from a BAM file
  ☆14Updated 2 years ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated 2 years ago
• ilyavs / exodus
  ☆11Updated 3 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated 11 months ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• ComparativeGenomicsToolkit / neutral-model-estimator
  Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
  ☆11Updated 5 years ago
• andreaminio / AnnotationPipeline-EVM_based-DClab
  Cantù Lab @ UC Davis - Annotation pipeline - EVM based
  ☆14Updated 11 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• nextgenusfs / redmask
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆18Updated 6 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 7 months ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• bartongroup / differr_nanopore_DRS
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Updated 4 years ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆41Updated 3 weeks ago
• shilpagarg / sdip
  ☆10Updated 5 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆18Updated 2 months ago
• mbhall88 / pistis
  Quality control plotting for long reads
  ☆10Updated last year
• at-cg / RAFT
  ☆28Updated last year
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• chaoszhang / A-pro
  ASTRAL for PaRalogs and Orthologs
  ☆21Updated 3 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 3 months ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆18Updated 2 years ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
  ☆22Updated last week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year