funkelab / motile
Multi-Object Tracker using Integer Linear Equations
☆30Updated last week
Alternatives and similar repositories for motile:
Users that are interested in motile are comparing it to the libraries listed below
- Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth☆29Updated this week
- napari plugin for trackastra☆13Updated 4 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆53Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆30Updated last week
- ☆59Updated 2 weeks ago
- StarDist plugin for napari☆37Updated 6 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Time arrow prediction for live-cell microscopy☆18Updated 8 months ago
- ☆23Updated 5 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- ☆30Updated 2 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Annotate microscopy images for CNN classifier☆11Updated 2 years ago
- ☆15Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- 3D shape analysis using deep learning☆23Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆13Updated 3 weeks ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- Tools for handling FIB-SEM data and annotations☆21Updated 5 months ago
- A napari plugin to view and edit metadata☆10Updated last year
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 4 months ago
- MorphoFeatures code and data☆20Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago