funkelab / motile
Multi-Object Tracker using Integer Linear Equations
☆27Updated last week
Related projects ⓘ
Alternatives and complementary repositories for motile
- Utils and convenience functions for large-scale bio-image analysis.☆48Updated last month
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated last year
- Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth☆25Updated last week
- ☆53Updated 2 weeks ago
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated 4 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Tools for handling FIB-SEM data and annotations☆21Updated 2 months ago
- ☆21Updated 2 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆23Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated last week
- Process and analyze surfaces using vedo in napari.☆23Updated 6 months ago
- Time arrow prediction for live-cell microscopy☆18Updated 5 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆54Updated 3 weeks ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Napari gaming☆16Updated 2 years ago
- Affinity based segmentation algorithms and tools☆9Updated 2 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆20Updated 3 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆16Updated last week
- Course and exercises on deep learning for microscopy image analysis☆13Updated 8 months ago
- Main tasks for the Fractal analytics platform☆14Updated this week
- MorphoFeatures code and data☆18Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- A deep-learning library for N2V and friends☆30Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆28Updated this week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- GPU-accelerated general purpose image processing and image analysis in napari☆34Updated last month
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- A napari plugin to view and edit metadata☆10Updated last year
- ☆15Updated 2 years ago