CAREamics / careamicsView external linksLinks
A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and documentation.)
☆120Updated this week
Alternatives and similar repositories for careamics
Users that are interested in careamics are comparing it to the libraries listed below
Sorting:
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 2 months ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆105Updated this week
- ☆38Dec 5, 2025Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Dec 22, 2025Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆35Feb 3, 2026Updated last week
- ☆15Jan 20, 2026Updated 3 weeks ago
- Segment images utilizing pre-trained neural networks as feature extractors☆47Jan 21, 2026Updated 3 weeks ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Feb 7, 2026Updated last week
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆38Feb 6, 2026Updated last week
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆28Feb 5, 2026Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- ☆41Updated this week
- Specification for the bioimage.io model description file.☆23Updated this week
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated last week
- Spotiflow plugin for napari☆15Feb 2, 2026Updated last week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Particle tracking by solving linear assignment problem.☆62Updated this week
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- Cell tracking and segmentation software☆170Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 2 months ago
- dask empowered fast4dreg☆15Nov 25, 2024Updated last year
- Transformer-based cell tracking for live-cell microscopy☆123Feb 1, 2026Updated last week
- GPU-accelerated Image Processing library for Python☆53Feb 2, 2026Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆63Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 5 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 9 months ago
- A napari plugin to analysis point spread functions.☆12Mar 28, 2025Updated 10 months ago
- Guide to python package development for scientists☆27Jan 5, 2026Updated last month
- A python package for fitting splines.☆23Feb 6, 2026Updated last week
- This is the implementation of Noise2Void training.☆476Dec 18, 2024Updated last year
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 7 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆84Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Oct 27, 2024Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Nov 10, 2022Updated 3 years ago
- StarDist plugin for napari☆38Aug 24, 2024Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Dec 2, 2025Updated 2 months ago