Python libraries for loading, running and packaging bioimage.io models
☆35Apr 22, 2026Updated last week
Alternatives and similar repositories for core-bioimage-io-python
Users that are interested in core-bioimage-io-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Specification for the bioimage.io model description file.☆23Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆22Nov 24, 2025Updated 5 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 10 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Apr 20, 2026Updated last week
- A deep-learning library for denoising images using Noise2Void and friends, with a focus on user-experience and documentation.)☆133Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Resources for teaching/preparing to teach bioimage analysis☆61Updated this week
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- GPU-accelerated general purpose image processing and image analysis in napari☆36May 1, 2025Updated 11 months ago
- ☆38Mar 9, 2026Updated last month
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- ☆24Apr 7, 2026Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆62Updated this week
- ☆30Mar 23, 2026Updated last month
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A napari plugin for clustering objects according to their properties.☆90Apr 20, 2026Updated last week
- Transformer-based cell tracking for live-cell microscopy☆129Mar 31, 2026Updated last month
- ☆12May 6, 2024Updated last year
- Process images using SimpleITK in napari☆23May 1, 2025Updated 11 months ago
- Easy Volumetric Segmentation with Deep Learning☆28Mar 30, 2026Updated last month
- ☆14Jun 4, 2023Updated 2 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Linking napari layers with Matplotlib plots☆43Apr 2, 2026Updated 3 weeks ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated 11 months ago
- A dataset for loading zarr files to be used in machine learning training pipelines☆35Jan 5, 2026Updated 3 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆90Apr 22, 2026Updated last week
- ☆15Feb 5, 2025Updated last year
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated 2 years ago
- Your Personal Assistant in Computational Bioimaging.☆47Mar 28, 2025Updated last year
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- A python package for fitting splines.☆23Apr 9, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A napari plugin for zarr backed OME-NGFF images☆49Apr 13, 2026Updated 2 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆33Mar 24, 2026Updated last month
- ☆42Apr 15, 2026Updated 2 weeks ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 7 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆125Updated this week
- Open source Python library for building bioimage analysis pipelines☆197Apr 23, 2026Updated last week
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆30Apr 3, 2026Updated 3 weeks ago