Python libraries for loading, running and packaging bioimage.io models
☆39Aug 6, 2026Updated this week
Alternatives and similar repositories for core-bioimage-io-python
Users that are interested in core-bioimage-io-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Specification for the bioimage.io model description file.☆23Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 8 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Jun 30, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- python tools for BigDataViewer☆23Jul 2, 2026Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆63Updated this week
- GPU-accelerated general purpose image processing and image analysis in napari☆36May 1, 2025Updated last year
- StarDist plugin for napari☆40Aug 24, 2024Updated last year
- ☆39May 29, 2026Updated 2 months ago
- Transformer-based cell tracking for live-cell microscopy☆143Updated this week
- ☆24Jul 22, 2026Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆54Jul 31, 2026Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆32May 12, 2026Updated 2 months ago
- Deep-learning library for image restoration.☆148Updated this week
- A napari plugin for clustering objects according to their properties.☆90Updated this week
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- ☆11May 6, 2024Updated 2 years ago
- ☆15Feb 5, 2025Updated last year
- Easy Volumetric Segmentation with Deep Learning☆30Mar 30, 2026Updated 4 months ago
- ☆14Jun 4, 2023Updated 3 years ago
- Linking napari layers with Matplotlib plots☆45Jul 1, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated last year
- A python package for fitting splines.☆24Jul 27, 2026Updated last week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- Light microscopy simulation in python.☆55Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Updated this week
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Your Personal Assistant in Computational Bioimaging.☆48Mar 28, 2025Updated last year
- A dataset for loading zarr files to be used in machine learning training pipelines☆37Jan 5, 2026Updated 7 months ago
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated 2 years ago
- Open source Python library for building bioimage analysis pipelines☆209Updated this week
- ☆45Jul 31, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 10 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆130Updated this week