Python libraries for loading, running and packaging bioimage.io models
☆40Sep 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for core-bioimage-io-python
Users that are interested in core-bioimage-io-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Specification for the bioimage.io model description file.☆23Sep 15, 2026Updated 3 weeks ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 10 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Updated this week
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Jun 30, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- python tools for BigDataViewer☆23Jul 2, 2026Updated 3 months ago
- Resources for teaching/preparing to teach bioimage analysis☆65Updated this week
- GPU-accelerated general purpose image processing and image analysis in napari☆37May 1, 2025Updated last year
- StarDist plugin for napari☆42Aug 24, 2024Updated 2 years ago
- ☆39Sep 11, 2026Updated 3 weeks ago
- Transformer-based cell tracking for live-cell microscopy☆155Sep 11, 2026Updated 3 weeks ago
- ☆24Jul 22, 2026Updated 2 months ago
- A napari plugin for zarr backed OME-NGFF images☆56Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆32May 12, 2026Updated 4 months ago
- Deep-learning library for image restoration.☆154Updated this week
- A napari plugin for clustering objects according to their properties.☆91Oct 1, 2026Updated last week
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- ☆15Feb 5, 2025Updated last year
- ☆11May 6, 2024Updated 2 years ago
- Easy Volumetric Segmentation with Deep Learning☆30Mar 30, 2026Updated 6 months ago
- ☆14Jun 4, 2023Updated 3 years ago
- Linking napari layers with Matplotlib plots☆47Jul 1, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 5 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated last year
- A python package for fitting splines.☆24Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Mar 8, 2025Updated last year
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆49May 1, 2025Updated last year
- Light microscopy simulation in python.☆55Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Sep 30, 2026Updated last week
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Your Personal Assistant in Computational Bioimaging.☆50Mar 28, 2025Updated last year
- A dataset for loading zarr files to be used in machine learning training pipelines☆37Jan 5, 2026Updated 9 months ago
- A self-supervised denoising algorithm.☆31Updated this week
- Open source Python library for building bioimage analysis pipelines☆214Updated this week
- ☆45Sep 28, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆131Updated this week