bioimage-io / core-bioimage-io-pythonLinks
Python libraries for loading, running and packaging bioimage.io models
☆33Updated this week
Alternatives and similar repositories for core-bioimage-io-python
Users that are interested in core-bioimage-io-python are comparing it to the libraries listed below
Sorting:
- StarDist plugin for napari☆39Updated last year
- Command-line client for Fractal☆46Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 5 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- ☆23Updated 3 months ago
- Specification for the bioimage.io model description file.☆21Updated this week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆50Updated this week
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆102Updated this week
- ☆32Updated 5 months ago
- A napari plugin for zarr backed OME-NGFF images☆37Updated 2 weeks ago
- A template repo used to make new napari plugins☆27Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆24Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- Main tasks for the Fractal analytics platform☆20Updated last week
- A stable diffusion demo for napari☆11Updated last year
- ☆51Updated 5 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- Visualizing feature measurements on label images in napari☆10Updated last year
- ☆15Updated 2 months ago
- Browse your OMERO database from within napari.☆39Updated last week
- A minimal Python package for reading and validating OME-Zarr (meta)data☆34Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- native Python dataclasses for the OME data model☆61Updated last week
- GPU-accelerated Image Processing library for Python☆51Updated this week