Reference implementation of the Graph Exchange File Format
☆42Aug 31, 2026Updated this week
Alternatives and similar repositories for geff
Users that are interested in geff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Aug 25, 2026Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆21Aug 10, 2023Updated 3 years ago
- Multi-Object Tracking with Integer Linear Equations☆40Jul 21, 2026Updated last month
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Particle tracking by solving linear assignment problem.☆69Jul 30, 2026Updated last month
- Streaming directly to Zarr on the file system or S3☆30Updated this week
- python tools for BigDataViewer☆23Jul 2, 2026Updated 2 months ago
- Transformer-based cell tracking for live-cell microscopy☆149Aug 7, 2026Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 11 months ago
- ☆27Updated this week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- Cell tracking and segmentation software☆206Aug 13, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Aug 26, 2026Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆48Aug 24, 2026Updated last week
- Light microscopy simulation in python.☆55Aug 3, 2026Updated 3 weeks ago
- Yet Another Ome-ZARR Schema❗️☆23Jul 1, 2026Updated 2 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆72Updated this week
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- GPU-accelerated Image Processing library for C++☆16Aug 24, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A napari plugin for zarr backed OME-NGFF images☆54Updated this week
- GPU-accelerated Image Processing library for Python☆65Aug 20, 2026Updated last week
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆129Aug 23, 2026Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Mar 8, 2025Updated last year
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Apr 5, 2026Updated 4 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆99Aug 6, 2026Updated 3 weeks ago
- An introduction to OME-Zarr for big bioimaging data☆28Updated this week
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆24Jul 7, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Content-adaptive storage and processing of large volumetric microscopy data using the Adaptive Particle Representation (APR)☆21Aug 21, 2024Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31May 28, 2026Updated 3 months ago
- A napari plugin to view and edit layer metadata☆13Aug 25, 2026Updated last week
- Template for creating a new python repository☆13Sep 28, 2025Updated 11 months ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Java implementation of Appose ☕☆15Jun 24, 2026Updated 2 months ago