Accurate, generalizable and user-friendly 3D cell segmentation
☆19Nov 1, 2026Updated last week
Alternatives and similar repositories for FOCUS-3D
Users that are interested in FOCUS-3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- network-flow based object tracking☆10Sep 14, 2026Updated last month
- ☆14Oct 30, 2026Updated last week
- Higher-Order Cell Tracking (HOCT)☆27Updated this week
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Tiled processing of arbitrarily large images — any image, any function.☆20Nov 3, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- 7 sessions workshop about bioimage analysis☆14Nov 24, 2025Updated 11 months ago
- ☆13Jun 18, 2026Updated 4 months ago
- An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.☆11Jul 29, 2026Updated 3 months ago
- Guides and code for 3D nuclear instance segmentation☆26Dec 2, 2025Updated 11 months ago
- Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.☆11Oct 29, 2026Updated 2 weeks ago
- napari widgets for start-to-finish batch processing☆16Jun 1, 2026Updated 5 months ago
- ☆12May 26, 2026Updated 5 months ago
- An ImageJ/R pipeline for filopodia dynamics analysis☆11Feb 5, 2024Updated 2 years ago
- A recast of cell segmentation models built on the Burn deep learning framework.☆25Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆11May 2, 2026Updated 6 months ago
- napari plugin for trackastra☆19Jul 16, 2026Updated 3 months ago
- Bioimage Analysis with Python☆12Updated this week
- Automated batch processing of tissue microscopy image data with a text-based interface☆10Mar 24, 2026Updated 7 months ago
- Cell tracking and segmentation software☆211Nov 1, 2026Updated last week
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆13May 13, 2022Updated 4 years ago
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 4 months ago
- Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ☆14Nov 7, 2017Updated 9 years ago
- Module to read and "work" with lineage trees☆13Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆71Jul 18, 2026Updated 3 months ago
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆21Jun 16, 2025Updated last year
- Interprocess environment manager 🧊☆20Oct 20, 2026Updated 3 weeks ago
- Browse, share, and publish OME-Zarr data☆33Updated this week
- Modern Bio-Formats wrapper with clean lazy Python API☆24Nov 5, 2026Updated last week
- A common data structure and basic tools for multi-object tracking.☆15Oct 16, 2026Updated 3 weeks ago
- Fast local thickness in 3D and 2D☆24Jun 14, 2023Updated 3 years ago
- A python algorithm for tracking cells in 3D deforming organs☆70Nov 13, 2025Updated last year
- An interactive terminal image viewer that renders images as ASCII art, Unicode blocks, and colorful ANSI text. Zoom and pan through PNG, …☆19Nov 1, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆27Oct 30, 2026Updated last week
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆19Oct 20, 2026Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Transformer-based cell tracking for live-cell microscopy☆160Sep 11, 2026Updated 2 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆80Oct 28, 2026Updated 2 weeks ago
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆26Jul 7, 2026Updated 4 months ago
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆32Nov 17, 2025Updated 11 months ago
Are these results useful?