Modern Bio-Formats wrapper with clean lazy Python API
☆22Jun 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for bffile
Users that are interested in bffile are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Jul 10, 2026Updated last week
- Template for creating a new python repository☆13Sep 28, 2025Updated 9 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- GPU-accelerated Image Processing library for Python☆62Jul 8, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A napari plugin to view and edit layer metadata☆13Jul 13, 2026Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆127Jul 1, 2026Updated 2 weeks ago
- Reference implementation of the Graph Exchange File Format☆41Updated this week
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 3 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆72Updated this week
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 2 weeks ago
- Light microscopy simulation in python.☆54Jul 6, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆26Jun 3, 2026Updated last month
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆122Updated this week
- An introduction to OME-Zarr for big bioimaging data☆27Jul 1, 2026Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆53Jul 13, 2026Updated last week
- Particle tracking by solving linear assignment problem.☆66Jul 5, 2026Updated 2 weeks ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 3 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆249Jul 13, 2026Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆42Jun 7, 2026Updated last month
- dask empowered fast4dreg☆17Mar 11, 2026Updated 4 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆24Jul 7, 2026Updated last week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆96Jul 7, 2026Updated last week
- ☆15Apr 1, 2026Updated 3 months ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated 2 weeks ago
- A toolbox for analysing and simulating Image Scanning Microscopy (ISM) datasets.☆19Jul 10, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A recast of cell segmentation models built on the Burn deep learning framework.☆23Updated this week
- A template repo used to make new napari plugins☆40Jul 12, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 10 months ago
- Browse, share, and publish OME-Zarr data☆29Updated this week
- Java implementation of Appose ☕☆15Jun 24, 2026Updated 3 weeks ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Jul 3, 2026Updated 2 weeks ago
- Yet Another Ome-ZARR Schema❗️☆23Jul 1, 2026Updated 2 weeks ago