Modern Bio-Formats wrapper with clean lazy Python API
☆23Jun 25, 2026Updated last month
Alternatives and similar repositories for bffile
Users that are interested in bffile are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- Template for creating a new python repository☆13Sep 28, 2025Updated 10 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 weeks ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- A napari plugin to view and edit layer metadata☆13Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GPU-accelerated Image Processing library for Python☆63Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Updated this week
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated last month
- ☆26Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Light microscopy simulation in python.☆55Updated this week
- An introduction to OME-Zarr for big bioimaging data☆27Updated this week
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆130Updated this week
- A napari plugin for zarr backed OME-NGFF images☆54Jul 31, 2026Updated last week
- Particle tracking by solving linear assignment problem.☆67Jul 30, 2026Updated last week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 4 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆255Updated this week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆43Jun 7, 2026Updated 2 months ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 4 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 8 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- python tools for BigDataViewer☆23Jul 2, 2026Updated last month
- A toolbox for analysing and simulating Image Scanning Microscopy (ISM) datasets.☆19Jul 23, 2026Updated 2 weeks ago
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆24Jul 7, 2026Updated last month
- A recast of cell segmentation models built on the Burn deep learning framework.☆23Jul 30, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 10 months ago
- A template repo used to make new napari plugins☆41Updated this week
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated 11 months ago
- Java implementation of Appose ☕☆15Jun 24, 2026Updated last month
- Browse, share, and publish OME-Zarr data☆29Updated this week
- Yet Another Ome-ZARR Schema❗️☆23Jul 1, 2026Updated last month