[ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos
☆81Nov 30, 2022Updated 3 years ago
Alternatives and similar repositories for cell-tracker-gnn
Users that are interested in cell-tracker-gnn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Track cells and build cell lineages☆35Jun 4, 2026Updated last month
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Aug 4, 2020Updated 5 years ago
- This code was submitted to Cell Tracking Challenge, ISBI 2020.☆14May 19, 2021Updated 5 years ago
- ☆17Jun 15, 2023Updated 3 years ago
- Transformer-based cell tracking for live-cell microscopy☆137Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A python algorithm for tracking cells in 3D deforming organs☆70Nov 13, 2025Updated 8 months ago
- MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".☆13Jul 19, 2024Updated 2 years ago
- ☆22Jan 19, 2023Updated 3 years ago
- CellTracker: An Automated Toolbox for Single-Cell Segmentation and Tracking in Microscopy Images☆20Dec 2, 2020Updated 5 years ago
- A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy☆17Apr 23, 2025Updated last year
- Cell tracking and segmentation software☆199Updated this week
- An automated imageJ macro which can be used to detect and measure the size of particles in images, maps of images or videos☆12Mar 25, 2024Updated 2 years ago
- Repository for the publication "Denoising Diffusion Probabilistic Models for Generation of Realistic Fully-Annotated Microscopy Image Dat…☆37Mar 6, 2024Updated 2 years ago
- ☆10Feb 5, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- napari plugin for trackastra☆18Updated this week
- Physarum Powered Differentiable Linear Programming Layers☆17Oct 27, 2021Updated 4 years ago
- MPM: Joint Representation of Motion and Position Map for Cell Tracking☆41Jul 27, 2021Updated 4 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 3 months ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 3 weeks ago
- TrackMate is your buddy for your everyday tracking.☆236Updated this week
- 2d and 3d distance transform based skeletonization☆24Dec 4, 2023Updated 2 years ago
- ☆13Aug 30, 2024Updated last year
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Cell tracker designed for tracking intestinal organoids☆39Updated this week
- Bayesian multi-object tracking☆334Apr 1, 2026Updated 3 months ago
- Multi-task UNet for medical image classification and saliency prediction☆15Jan 29, 2022Updated 4 years ago
- ☆16Aug 30, 2024Updated last year
- Code for the THItoGene☆30Apr 9, 2025Updated last year
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆27Jan 31, 2026Updated 5 months ago
- Main tasks for the Fractal analytics platform☆27Jul 13, 2026Updated last week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆27Jul 22, 2024Updated last year
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 3 years ago
- Finetuning & extending DiffusionDet to video & pedestrian multi-object-tracking☆13Apr 12, 2023Updated 3 years ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- MICCAI2023 - TransNuSeg: A Lightweight Multi-Task Transformer for Nuclei Segmentation☆26Feb 5, 2024Updated 2 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆200Updated this week
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Updated this week
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Jan 1, 2024Updated 2 years ago