talbenha / cell-tracker-gnnLinks
[ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos
☆76Updated 2 years ago
Alternatives and similar repositories for cell-tracker-gnn
Users that are interested in cell-tracker-gnn are comparing it to the libraries listed below
Sorting:
- Transformer-based cell tracking for live-cell microscopy☆109Updated this week
- A python algorithm for tracking cells in 3D deforming organs☆65Updated last week
- Track cells and build cell lineages☆35Updated last year
- ☆15Updated 2 years ago
- Codebase for "A Foundation Model for Cell Segmentation"☆113Updated last week
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆125Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆186Updated this week
- ☆21Updated 2 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆110Updated last week
- Cell tracking and segmentation software☆156Updated last week
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆81Updated 2 weeks ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- Course and exercises on deep learning for microscopy image analysis☆19Updated 2 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆82Updated this week
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- ☆28Updated last year
- ☆90Updated 2 weeks ago
- ☆195Updated 2 weeks ago
- ☆202Updated 2 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated 2 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated this week
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆25Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆122Updated last year
- Segment Anything for Microscopy☆616Updated this week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Unsupervised Instance Segmentation in Microscopy☆24Updated last year
- Open source Python library for building bioimage analysis pipelines☆187Updated this week
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆34Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year