Alternatives and similar repositories for cell-tracker-gnn

Users that are interested in cell-tracker-gnn are comparing it to the libraries listed below

• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆60Updated 3 months ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆71Updated last week
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆75Updated last month
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆35Updated 11 months ago
• computational-cell-analytics / dl-for-micro
  Course and exercises on deep learning for microscopy image analysis
  ☆19Updated last month
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆115Updated last week
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆179Updated this week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆80Updated 2 months ago
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆558Updated 3 weeks ago
• abzargar / DeepSea
  ☆13Updated 2 years ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆121Updated this week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆98Updated this week
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆114Updated this week
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• jiyuuchc / lacss
  A deep learning model for single cell segmentation from microsopy images.
  ☆37Updated this week
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆178Updated this week
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆97Updated 3 weeks ago
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆140Updated 2 months ago
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated 2 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• SchmollerLab / SpotMAX
  SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification
  ☆12Updated this week
• sartorius-research / LIVECell
  ☆194Updated 2 years ago
• jvzonlab / OrganoidTracker
  Cell tracker designed for tracking intestinal organoids
  ☆26Updated this week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆91Updated last week
• kaloeffler / EmbedTrack
  ☆21Updated 2 years ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆34Updated last month
• instanseg / instanseg
  ☆173Updated last week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆116Updated last year
• bioimage-io / archive.bioimage.io
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
  ☆60Updated 2 weeks ago