Alternatives and similar repositories for cell-tracker-gnn:

Users that are interested in cell-tracker-gnn are comparing it to the libraries listed below

• weigertlab / trackastra
  ☆69Updated 2 months ago
• abzargar / DeepSea
  ☆13Updated last year
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆57Updated 2 weeks ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆109Updated last week
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆33Updated 8 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆74Updated this week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆76Updated last month
• LIMT34 / LIM-Tracker
  ☆10Updated 2 years ago
• Janelia-Trackathon-2023 / traccuracy
  Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
  ☆30Updated this week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆80Updated 3 weeks ago
• SchmollerLab / SpotMAX
  SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification
  ☆12Updated last month
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆65Updated 2 weeks ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆34Updated 2 years ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆29Updated this week
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆93Updated this week
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆81Updated this week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆86Updated this week
• peng-lab / BaSiCPy
  ☆71Updated last month
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆31Updated 3 years ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 7 months ago
• imzhangyd / MoTT
  MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".
  ☆12Updated 9 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• computational-cell-analytics / dl-for-micro
  Course and exercises on deep learning for microscopy image analysis
  ☆16Updated last year
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 5 months ago
• imagej / i2k-2022-pyimagej
  Workshop materials for "I2K 2022: From Images to Knowledge" conference
  ☆11Updated 2 years ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 weeks ago
• instanseg / instanseg
  ☆154Updated this week
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆144Updated this week
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆28Updated 2 years ago
• jvzonlab / OrganoidTracker
  Cell tracker designed for tracking intestinal organoids
  ☆21Updated last week