Light microscopy simulation in python.
☆55Aug 3, 2026Updated last month
Alternatives and similar repositories for microsim
Users that are interested in microsim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆47Jun 7, 2026Updated 3 months ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 9 months ago
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Template for creating a new python repository☆13Sep 28, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆99Aug 6, 2026Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆72Updated this week
- ☆27Updated this week
- GPU-accelerated Image Processing library for Python☆65Updated this week
- ☆30Jun 10, 2026Updated 2 months ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 5 months ago
- Block-wise operations for large nD volumes☆45Updated this week
- Accurate and efficient spot detection for microscopy data☆141Jun 8, 2026Updated 2 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆51Aug 27, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 4 months ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆26Oct 30, 2024Updated last year
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆59May 20, 2024Updated 2 years ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated last month
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆56Updated this week
- Transformer-based cell tracking for live-cell microscopy☆150Updated this week
- Streaming directly to Zarr on the file system or S3☆30Aug 30, 2026Updated last week
- Deep-learning library for image restoration.☆150Updated this week
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 5 months ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- Guide to python package development for scientists☆27Aug 10, 2026Updated 3 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆130Aug 23, 2026Updated 2 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Mar 8, 2025Updated last year
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆24Jul 7, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python libraries for loading, running and packaging bioimage.io models☆40Aug 25, 2026Updated last week
- A web-based, time-series visualizer for tracked segmented data.☆17Updated this week
- Java implementation of Appose ☕☆15Jun 24, 2026Updated 2 months ago
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 2 months ago
- Scientific image analysis resources and software tools.☆48Aug 18, 2026Updated 2 weeks ago