tlambert03 / microsimLinks
Light microscopy simulation in python.
☆43Updated 3 weeks ago
Alternatives and similar repositories for microsim
Users that are interested in microsim are comparing it to the libraries listed below
Sorting:
- Acquire: a multi-camera video streaming software focusing on microscopy☆23Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- ☆51Updated 9 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆35Updated last week
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆119Updated this week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Updated last month
- dask empowered fast4dreg☆15Updated last year
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Updated this week
- Multi-Object Tracker using Integer Linear Equations☆38Updated last month
- Pure python/C++ micro-manager ecosystem☆46Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- Browse your OMERO database from within napari.☆40Updated 3 weeks ago
- ☆22Updated 7 months ago
- ☆38Updated 2 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆28Updated this week
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- StarDist plugin for napari☆38Updated last year
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- A napari plugin to analysis point spread functions.☆12Updated 10 months ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Updated 4 months ago
- A template repo used to make new napari plugins☆31Updated last week
- ☆36Updated last year
- ☆15Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago