Light microscopy simulation in python.
☆55Sep 7, 2026Updated 2 weeks ago
Alternatives and similar repositories for microsim
Users that are interested in microsim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆48Jun 7, 2026Updated 3 months ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 10 months ago
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Template for creating a new python repository☆13Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆99Sep 8, 2026Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Sep 18, 2026Updated last week
- ☆27Sep 11, 2026Updated 2 weeks ago
- GPU-accelerated Image Processing library for Python☆65Updated this week
- ☆30Jun 10, 2026Updated 3 months ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 6 months ago
- Block-wise operations for large nD volumes☆45Updated this week
- Accurate and efficient spot detection for microscopy data☆143Jun 8, 2026Updated 3 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 5 months ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆26Oct 30, 2024Updated last year
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆59May 20, 2024Updated 2 years ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated last month
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆56Updated this week
- Transformer-based cell tracking for live-cell microscopy☆154Sep 11, 2026Updated 2 weeks ago
- Streaming directly to Zarr on the file system or S3☆35Updated this week
- Deep-learning library for image restoration.☆152Updated this week
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Sep 19, 2026Updated last week
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 6 months ago
- A napari plugin to view and edit layer metadata☆14Sep 8, 2026Updated 2 weeks ago
- Guide to python package development for scientists☆27Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Mar 8, 2025Updated last year
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆25Jul 7, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python libraries for loading, running and packaging bioimage.io models☆40Sep 15, 2026Updated last week
- A web-based, time-series visualizer for tracked segmented data.☆17Updated this week
- Java implementation of Appose ☕☆15Updated this week
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 3 months ago
- Scientific image analysis resources and software tools.☆48Updated this week