tlambert03 / microsimLinks
☆33Updated last week
Alternatives and similar repositories for microsim
Users that are interested in microsim are comparing it to the libraries listed below
Sorting:
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 7 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- ☆49Updated last month
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆23Updated last month
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- dask empowered fast4dreg☆11Updated 6 months ago
- Multi-Object Tracker using Integer Linear Equations☆31Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated last month
- ☆23Updated 3 weeks ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- napari plugin for trackastra☆13Updated 7 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆73Updated this week
- ☆15Updated 2 years ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last week
- Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth☆31Updated last week
- Automated mitochondrial segmentation and tracking.☆32Updated 3 years ago
- A napari plugin to analysis point spread functions.☆12Updated 2 months ago
- Browse your OMERO database from within napari.☆37Updated this week
- ☆35Updated 2 weeks ago
- 1d plotting in napari-based canvas.☆26Updated this week
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…☆13Updated 3 weeks ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆33Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- A template repo used to make new napari plugins☆23Updated 3 weeks ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated last week
- Course and exercises on deep learning for microscopy image analysis☆17Updated this week