tlambert03 / microsim
☆14Updated last week
Related projects: ⓘ
- A deep-learning library for N2V and friends☆28Updated this week
- A napari plugin to view and edit metadata☆10Updated last year
- Acquire: a multi-camera video streaming software focusing on microscopy☆17Updated 2 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆23Updated 2 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆33Updated last week
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated 2 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- ☆28Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆22Updated 2 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆20Updated last month
- ☆20Updated this week
- Specification for the bioimage.io model description file.☆18Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆27Updated last week
- Affinity based segmentation algorithms and tools☆9Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆24Updated 2 weeks ago
- ☆20Updated 10 months ago
- Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth☆25Updated this week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated 2 weeks ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆17Updated last year
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- 1d plotting in napari-based canvas.☆24Updated last week
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆15Updated this week
- Annotate microscopy images for CNN classifier☆10Updated 2 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 11 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- Main tasks for the Fractal analytics platform☆14Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 2 weeks ago
- napari plugin for trackastra☆12Updated last month
- A 3D interactivity toolbox for napari☆32Updated last month
- ☆49Updated 2 weeks ago