guiwitz / napari-skimage
A minimal dependency napari plugin giving access to scikit-image functions
☆17Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for napari-skimage
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated last week
- ☆15Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆23Updated last month
- Visualizing feature measurements on label images in napari☆10Updated 4 months ago
- A napari plugin to view and edit metadata☆10Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- ☆10Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆54Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 5 months ago
- ☆12Updated 6 months ago
- Python libraries for loading, running and packaging bioimage.io models☆28Updated this week
- A 3D interactivity toolbox for napari☆32Updated last month
- ☆29Updated 8 months ago
- Browse your OMERO database from within napari.☆33Updated 2 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- ☆43Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 3 weeks ago
- Main tasks for the Fractal analytics platform☆14Updated this week
- ☆21Updated 2 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)☆9Updated 8 months ago
- A Board Game to teach co-localization analysis☆12Updated 3 weeks ago
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated 4 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- Guides and code for 3D nuclear instance segmentation☆19Updated this week