trackmate-sc / TrackMateLinks
TrackMate is your buddy for your everyday tracking.
☆215Updated 2 weeks ago
Alternatives and similar repositories for TrackMate
Users that are interested in TrackMate are comparing it to the libraries listed below
Sorting:
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆230Updated 2 years ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆79Updated 2 weeks ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆150Updated last week
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- ☆85Updated 7 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆149Updated 3 weeks ago
- Cell tracking and segmentation software☆150Updated 3 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆182Updated this week
- Lectures for a napari training course☆51Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 5 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 9 months ago
- Detection of Molecules plugin for ImageJ, Utrecht University☆15Updated 2 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated last week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆73Updated 2 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ☆51Updated 5 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆169Updated 5 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated last week
- Accurate and efficient spot detection for microscopy data☆105Updated 2 weeks ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 9 months ago
- ☆16Updated last year
- The ImageJ plugin to run deep-learning models☆98Updated 3 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 10 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆152Updated 2 months ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆70Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago
- Course and exercises on deep learning for microscopy image analysis☆19Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year