TrackMate is your buddy for your everyday tracking.
☆237Jul 21, 2026Updated this week
Alternatives and similar repositories for TrackMate
Users that are interested in TrackMate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Particle tracking by solving linear assignment problem.☆66Jul 5, 2026Updated 2 weeks ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Transformer-based cell tracking for live-cell microscopy☆137Updated this week
- Import Trackmate XML files in Python as Pandas dataframe☆12Mar 1, 2025Updated last year
- Reference implementation of the Graph Exchange File Format☆41Jul 14, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆52May 1, 2025Updated last year
- StarDist plugin for napari☆40Aug 24, 2024Updated last year
- Interactive visualization and sharing of cell tracking data in the browser☆48Jun 23, 2026Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆82Jun 27, 2026Updated 3 weeks ago
- Cell tracking and segmentation software☆199Jul 15, 2026Updated last week
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- ☆10Feb 5, 2026Updated 5 months ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,285Jun 14, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Advanced Tool for Labeling And Segmentation☆41Oct 21, 2024Updated last year
- napari plugin for trackastra☆18Updated this week
- StarDist plugin for ImageJ☆32May 9, 2022Updated 4 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Apr 20, 2026Updated 3 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆200Updated this week
- ☆21Jul 2, 2026Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- Accurate and efficient spot detection for microscopy data☆137Jun 8, 2026Updated last month
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 7 months ago
- GPU-accelerated image processing for everyone☆60Jul 4, 2024Updated 2 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Zernike Optimized Localization Algorithm for 3D single molecule localizations☆19Sep 20, 2022Updated 3 years ago
- Use ImageJ from Python☆534Jun 17, 2026Updated last month
- ☆15Updated this week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Jun 3, 2026Updated last month
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆648Mar 29, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 3 months ago
- Collection of mathematical morphology methods and plugins for ImageJ☆124May 7, 2026Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 2 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆182Jan 17, 2026Updated 6 months ago
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated 2 years ago