TrackMate is your buddy for your everyday tracking.
☆234Mar 25, 2026Updated last month
Alternatives and similar repositories for TrackMate
Users that are interested in TrackMate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Particle tracking by solving linear assignment problem.☆64May 8, 2026Updated 2 weeks ago
- Import Trackmate XML files in Python as Pandas dataframe☆12Mar 1, 2025Updated last year
- ☆52May 1, 2025Updated last year
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- Interactive visualization and sharing of cell tracking data in the browser☆48Apr 21, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Transformer-based cell tracking for live-cell microscopy☆130Mar 31, 2026Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Cell tracking and segmentation software☆177May 14, 2026Updated last week
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆83Feb 3, 2026Updated 3 months ago
- Reference implementation of the Graph Exchange File Format☆39Updated this week
- Advanced Tool for Labeling And Segmentation☆40Oct 21, 2024Updated last year
- napari plugin for trackastra☆18Nov 12, 2025Updated 6 months ago
- StarDist plugin for ImageJ☆31May 9, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Commands and Classes for interfacing between Imaris and Fiji☆13Apr 20, 2026Updated last month
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,204Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆196Updated this week
- ☆21Apr 28, 2026Updated 3 weeks ago
- ☆10Feb 5, 2026Updated 3 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- Accurate and efficient spot detection for microscopy data☆125Feb 5, 2026Updated 3 months ago
- GPU-accelerated image processing for everyone☆58Jul 4, 2024Updated last year
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 11 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated last month
- Use ImageJ from Python☆532Mar 16, 2026Updated 2 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆641Mar 29, 2026Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 3 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆52Feb 4, 2025Updated last year
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 10 months ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Collection of mathematical morphology methods and plugins for ImageJ☆121May 7, 2026Updated 2 weeks ago
- Zernike Optimized Localization Algorithm for 3D single molecule localizations☆19Sep 20, 2022Updated 3 years ago
- Bayesian multi-object tracking☆333Apr 1, 2026Updated last month
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆182Jan 17, 2026Updated 4 months ago
- ☆24Sep 13, 2025Updated 8 months ago
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated last year
- Detection of Molecules plugin for ImageJ: SMLM 2D/3D localizations, drift and chromatic aberration correction, etc☆15Nov 16, 2022Updated 3 years ago