jvzonlab / OrganoidTrackerLinks
Cell tracker designed for tracking intestinal organoids
☆28Updated last week
Alternatives and similar repositories for OrganoidTracker
Users that are interested in OrganoidTracker are comparing it to the libraries listed below
Sorting:
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆32Updated 2 months ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆182Updated this week
- ☆25Updated 5 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- MorphoFeatures code and data☆22Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆46Updated last month
- A python algorithm for tracking cells in 3D time lapse images.☆64Updated last month
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- ☆30Updated 9 months ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- Open source Python library for building bioimage analysis pipelines☆184Updated last week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆82Updated 6 months ago
- Cell tracking and segmentation software☆150Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- ☆85Updated 7 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 9 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- multimodal whole slide image registration in a graph structure☆95Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆149Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- CellProfiler tutorial pipelines and images☆98Updated this week