jvzonlab / OrganoidTracker
Cell tracker designed for tracking intestinal organoids
☆21Updated last week
Alternatives and similar repositories for OrganoidTracker:
Users that are interested in OrganoidTracker are comparing it to the libraries listed below
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- Cell tracking and segmentation software☆112Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 7 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- ☆28Updated 3 months ago
- ☆71Updated last month
- A napari plugin for clustering objects according to their properties.☆84Updated this week
- ☆31Updated 2 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Cloud-based data annotation tools for biological images☆79Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated 2 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆157Updated this week
- ☆16Updated 9 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- Multiple-choice microscopy pipeline☆131Updated 2 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 3 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆20Updated 3 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆44Updated last month
- ☆32Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago