Alternatives and similar repositories for OrganoidTracker:

Users that are interested in OrganoidTracker are comparing it to the libraries listed below

• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 5 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated last year
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆59Updated last year
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆16Updated 8 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆43Updated last month
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 3 weeks ago
• KerenLab / CellSighter
  ☆32Updated last year
• oanegros / Blender_for_Biologists_2023
  ☆38Updated 8 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆109Updated this week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 6 months ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last week
• peng-lab / BaSiCPy
  ☆71Updated 3 weeks ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆75Updated last month
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆97Updated 2 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆83Updated this week
• LabTrivedi / MOrgAna
  ☆28Updated 2 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 5 months ago
• KristinaUlicna / DeepTree
  Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.
  ☆30Updated 4 years ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆44Updated this week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated last month
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆16Updated this week
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆156Updated last week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 7 months ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 6 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆56Updated last week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆35Updated 8 months ago