Source materials for a textbook on AI in Microscopy
☆16Sep 9, 2026Updated last week
Alternatives and similar repositories for BioImagingAI
Users that are interested in BioImagingAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dask empowered fast4dreg☆17Mar 11, 2026Updated 6 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- ☆39Sep 11, 2026Updated last week
- ☆17Jul 30, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A self-supervised denoising algorithm.☆30Apr 6, 2024Updated 2 years ago
- ☆27Sep 11, 2026Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆48Aug 24, 2026Updated 3 weeks ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- A napari plugin to view and edit layer metadata☆13Sep 8, 2026Updated last week
- Template for creating a new python repository☆13Sep 28, 2025Updated 11 months ago
- A napari plugin for zarr backed OME-NGFF images☆54Aug 31, 2026Updated 2 weeks ago
- Transformer-based cell tracking for live-cell microscopy☆153Sep 11, 2026Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Aug 7, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- StarDist plugin for napari☆41Aug 24, 2024Updated 2 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Updated this week
- ☆16Updated this week
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Jul 30, 2026Updated last month
- Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate☆36Feb 1, 2026Updated 7 months ago
- napari plugin for trackastra☆19Jul 16, 2026Updated 2 months ago
- Particle tracking by solving linear assignment problem.☆69Jul 30, 2026Updated last month
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A napari plugin for itk-elastix☆43Feb 16, 2026Updated 7 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated last month
- An introduction to OME-Zarr for big bioimaging data☆28Sep 1, 2026Updated 2 weeks ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆99Sep 8, 2026Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- ☆14Jan 25, 2024Updated 2 years ago
- ☆12Feb 23, 2026Updated 6 months ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆47May 1, 2025Updated last year
- Tools for distributed alignment of massive images☆95Sep 11, 2026Updated last week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- A Google Colab notebook for recognizing LCD panel digits using OpenCV and Python☆10Nov 8, 2022Updated 3 years ago
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 3 months ago
- A chrome extension for customizing highlight color.☆13Mar 13, 2022Updated 4 years ago
- A tool to support interactive machine learning for cryoET data☆12Aug 30, 2024Updated 2 years ago