Source materials for a textbook on AI in Microscopy
☆16Oct 5, 2026Updated this week
Alternatives and similar repositories for BioImagingAI
Users that are interested in BioImagingAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dask empowered fast4dreg☆17Mar 11, 2026Updated 6 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 3 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- ☆39Sep 11, 2026Updated 3 weeks ago
- ☆17Jul 30, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A self-supervised denoising algorithm.☆31Updated this week
- ☆27Sep 11, 2026Updated 3 weeks ago
- Interactive visualization and sharing of cell tracking data in the browser☆49Aug 24, 2026Updated last month
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- A napari plugin to view and edit layer metadata☆14Updated this week
- Template for creating a new python repository☆13Sep 22, 2026Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆56Updated this week
- Transformer-based cell tracking for live-cell microscopy☆155Sep 11, 2026Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Aug 7, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- StarDist plugin for napari☆42Aug 24, 2024Updated 2 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Updated this week
- ☆15Updated this week
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Updated this week
- Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate☆36Feb 1, 2026Updated 8 months ago
- napari plugin for trackastra☆19Jul 16, 2026Updated 2 months ago
- Particle tracking by solving linear assignment problem.☆69Jul 30, 2026Updated 2 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A napari plugin for itk-elastix☆43Feb 16, 2026Updated 7 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated 2 months ago
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated last week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- ☆14Jan 25, 2024Updated 2 years ago
- ☆12Feb 23, 2026Updated 7 months ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆49May 1, 2025Updated last year
- Tools for distributed alignment of massive images☆95Sep 22, 2026Updated 2 weeks ago
- A 3D interactivity toolbox for napari☆38Jul 8, 2025Updated last year
- A Google Colab notebook for recognizing LCD panel digits using OpenCV and Python☆10Nov 8, 2022Updated 3 years ago
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 4 months ago
- A chrome extension for customizing highlight color.☆14Mar 13, 2022Updated 4 years ago
- A tool to support interactive machine learning for cryoET data☆12Aug 30, 2024Updated 2 years ago