kaloeffler / EmbedTrack

Related projects: ⓘ

• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆136Updated 5 months ago
• instanseg / instanseg
  ☆57Updated this week
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆72Updated this week
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆110Updated 7 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆49Updated 3 months ago
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆19Updated 5 months ago
• kreshuklab / spoco
  PyTorch implementation of SPOCO
  ☆32Updated last month
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆19Updated last year
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆36Updated last month
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆17Updated last year
• MIC-DKFZ / napari-sam
  ☆221Updated 6 months ago
• lhaof / CellSeg
  The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge
  ☆13Updated last year
• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆18Updated 3 months ago
• jiyuuchc / lacss
  A deep learning model for single cell segmentation from microsopy images.
  ☆27Updated this week
• talbenha / cell-tracker-gnn
  [ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos
  ☆62Updated last year
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆85Updated last week
• weih527 / Pixel-Embedded-Affinity
  Learning to Model Pixel-Embedded Affinity for Homogeneous Instance Segmentation
  ☆12Updated last year
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆93Updated last week
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆40Updated last year
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆26Updated last month
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆50Updated 3 weeks ago
• beneroth13 / dinov2
  PyTorch code and models for the DINOv2 self-supervised learning method, own data set and own adapted training.
  ☆36Updated 5 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆73Updated 7 months ago
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆328Updated this week
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆21Updated last week
• royerlab / napari-segment-anything
  Segment Anything Model (SAM) native Qt UI
  ☆190Updated 3 weeks ago
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆120Updated 2 months ago
• Cassie07 / SNOW-Dataset
  [Scientific Data] The official code of "A Large-scale Synthetic Pathological Dataset for Deep Learning-enabled Segmentation of Breast Can…
  ☆17Updated 11 months ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆90Updated this week
• arcadelab / FastSAM3D
  Code for "FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images"
  ☆63Updated last month