kaloeffler / EmbedTrack
☆20Updated 2 years ago
Alternatives and similar repositories for EmbedTrack:
Users that are interested in EmbedTrack are comparing it to the libraries listed below
- Unsupervised Instance Segmentation in Microscopy☆21Updated 10 months ago
- Python package for deep learning based image to image transformation☆50Updated 8 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆83Updated last week
- ☆59Updated this week
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated last year
- ☆142Updated 2 weeks ago
- Codebase for "A Foundation Model for Cell Segmentation"☆71Updated this week
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆151Updated 10 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆21Updated last year
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆21Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 7 months ago
- ☆17Updated last year
- [ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos☆66Updated 2 years ago
- PyTorch implementation of SPOCO☆32Updated 6 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆51Updated last week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated last year
- ☆31Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆33Updated 2 years ago
- ☆13Updated last year
- ☆17Updated this week
- Cell tracking and segmentation software☆103Updated this week
- Time arrow prediction for live-cell microscopy☆18Updated 8 months ago
- Microsopic Image Analyzer (MIA)☆29Updated 10 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆107Updated this week
- MorphoFeatures code and data☆20Updated last year
- Easy Volumetric Segmentation with Deep Learning☆23Updated this week
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆26Updated this week
- Course and exercises on deep learning for microscopy image analysis☆14Updated 11 months ago
- Cloud-based data annotation tools for biological images☆77Updated last year