bluenote-1577 / flopp

Related projects ⓘ

Alternatives and complementary repositories for flopp

• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• mobinasri / flagger
  Evaluating genome assemblies
  ☆56Updated this week
• HudsonAlpha / fmlrc2
  ☆43Updated last year
• daewoooo / SVbyEye
  ☆69Updated last month
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆49Updated last month
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆64Updated 3 weeks ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆34Updated 8 months ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆82Updated last month
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆67Updated 3 years ago
• pangenome / impg
  implicit pangenome graph
  ☆42Updated this week
• maickrau / ribotin
  ☆30Updated this week
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆53Updated 2 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆63Updated last year
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆70Updated last week
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆42Updated 3 months ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 7 months ago
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆26Updated 5 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆27Updated this week
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆34Updated this week
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆41Updated 2 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆56Updated this week
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆31Updated 3 weeks ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 3 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆31Updated 5 years ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆65Updated last week
• kjenike / panagram
  ☆57Updated 3 weeks ago
• Nextomics / NextPolish2
  Repeat-aware polishing genomes assembled using HiFi long reads
  ☆68Updated last month
• GATB / gatb-minia-pipeline
  GATB Minia assembly pipeline
  ☆29Updated last year