flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
☆37Nov 3, 2023Updated 2 years ago
Alternatives and similar repositories for flopp
Users that are interested in flopp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- ☆17Jul 1, 2026Updated 2 weeks ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 8 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- ☆19May 10, 2023Updated 3 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆32May 28, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Nov 17, 2025Updated 8 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆135Updated this week
- ☆18Updated this week
- A tool for summarizing, extracting, generating and modifying DNA sequences.☆24Dec 17, 2024Updated last year
- ☆49Mar 19, 2023Updated 3 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 9 months ago
- ☆21Feb 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 7 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆128Jun 18, 2026Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 2 months ago
- A collaborative notebook for genes and genomes☆13Updated this week
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated last month
- Genetic maps in autopolyploids☆33Jan 12, 2026Updated 6 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month