bluenote-1577 / flopp
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
☆37Updated last year
Alternatives and similar repositories for flopp:
Users that are interested in flopp are comparing it to the libraries listed below
- implicit pangenome graph☆52Updated this week
- Split k-mer analysis – version 2☆75Updated last week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- ☆76Updated 4 months ago
- k-mer learning materials☆62Updated last week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated 3 weeks ago
- ☆45Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆54Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Ancient microbiome snakemake workflow☆21Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- PGR-TK: Pangenome Research Tool Kit☆98Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 6 months ago
- Recombination-free trees☆57Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆39Updated 3 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 4 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated last month
- Correct and scaffold assemblies using long reads☆49Updated last year
- ☆61Updated this week
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year