bluenote-1577 / floppView external linksLinks
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
☆37Nov 3, 2023Updated 2 years ago
Alternatives and similar repositories for flopp
Users that are interested in flopp are comparing it to the libraries listed below
Sorting:
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- ☆16Feb 2, 2026Updated last week
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- Web based viewer for small to medium GFA format files, similar to Bandage☆12Nov 14, 2025Updated 3 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 7 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆72Feb 19, 2019Updated 6 years ago
- base-level dotplots from PAF alignments☆31Sep 18, 2025Updated 4 months ago
- ☆49Mar 19, 2023Updated 2 years ago
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 3 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 8 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 4 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated last month
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆18Feb 6, 2026Updated last week
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- ☆18May 10, 2023Updated 2 years ago
- ☆18Dec 26, 2025Updated last month
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last week
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Dec 17, 2025Updated last month
- General purpose utility related to GAF files☆29Jan 27, 2026Updated 2 weeks ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆122Jun 3, 2025Updated 8 months ago
- ☆19Nov 17, 2025Updated 2 months ago
- ☆19Feb 15, 2025Updated last year
- ☆29Mar 27, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 2 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Jan 27, 2026Updated 2 weeks ago
- k-mer learning materials☆83Feb 14, 2025Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 9 months ago