Alternatives and similar repositories for flopp

Users that are interested in flopp are comparing it to the libraries listed below

• pangenome / impg
  implicit pangenome graph
  ☆71Updated last week
• kjenike / panagram
  ☆66Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 2 months ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 7 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆55Updated last month
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆82Updated last month
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆113Updated last week
• HudsonAlpha / fmlrc2
  ☆47Updated 2 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆85Updated this week
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 months ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆53Updated last year
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆81Updated 11 months ago
• koszullab / instaGRAAL
  Large genome reassembly based on Hi-C data, continuation of GRAAL
  ☆42Updated last year
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆87Updated 3 weeks ago
• GeneDx / pgr-tk
  ☆100Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆76Updated 3 weeks ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆78Updated 5 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated 2 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆44Updated this week
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆70Updated last week
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆78Updated 6 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆45Updated 9 months ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆66Updated 2 years ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆64Updated 5 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆105Updated last month
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆13Updated 8 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated 10 months ago